Rawhide builds time out

Question

Rawhide builds time out

junghans opened this issue 2 years ago · comments

Christoph Junghans commented 2 years ago

During espressomd detection:

f37b48de85b5:pid43.python3: Failed to get eth0 (unit 0) cpu set
f37b48de85b5:pid43: PSM3 can't open nic unit: 0 (err=23)
PMIx Log Report:[43]: (nic/PSM)[43]: PSM3 can't open nic unit: 0 (err=23)
f37b48de85b5:pid43.python3: Failed to get eth0 (unit 0) cpu set
f37b48de85b5:pid43: PSM3 can't open nic unit: 0 (err=23)
PMIx Log Report:[43]: (nic/PSM)[43]: PSM3 can't open nic unit: 0 (err=23)
f37b48de85b5:pid43.python3: Failed to get eth0 (unit 0) cpu set
f37b48de85b5:pid43: PSM3 can't open nic unit: 0 (err=23)
PMIx Log Report:[43]: (nic/PSM)[43]: PSM3 can't open nic unit: 0 (err=23)
f37b48de85b5:pid43.python3: Failed to get eth0 (unit 0) cpu set
f37b48de85b5:pid43: PSM3 can't open nic unit: 0 (err=23)
PMIx Log Report:[43]: (nic/PSM)[43]: PSM3 can't open nic unit: 0 (err=23)
--------------------------------------------------------------------------
Open MPI failed an OFI Libfabric library call (fi_endpoint).  This is highly
unusual; your job may behave unpredictably (and/or abort) after this.

  Local host: f37b48de85b5
  Location: mtl_ofi_component.c:512
  Error: Invalid argument (22)
--------------------------------------------------------------------------
[votca@f37b48de85b5 ~]$ python3 -c "import espressomd"
f37b48de85b5:pid50.python3: Failed to get eth0 (unit 0) cpu set
f37b48de85b5:pid50: PSM3 can't open nic unit: 0 (err=23)
PMIx Log Report:[50]: (nic/PSM)[50]: PSM3 can't open nic unit: 0 (err=23)
f37b48de85b5:pid50.python3: Failed to get eth0 (unit 0) cpu set
f37b48de85b5:pid50: PSM3 can't open nic unit: 0 (err=23)
PMIx Log Report:[50]: (nic/PSM)[50]: PSM3 can't open nic unit: 0 (err=23)
f37b48de85b5:pid50.python3: Failed to get eth0 (unit 0) cpu set
f37b48de85b5:pid50: PSM3 can't open nic unit: 0 (err=23)
PMIx Log Report:[50]: (nic/PSM)[50]: PSM3 can't open nic unit: 0 (err=23)
f37b48de85b5:pid50.python3: Failed to get eth0 (unit 0) cpu set
f37b48de85b5:pid50: PSM3 can't open nic unit: 0 (err=23)
PMIx Log Report:[50]: (nic/PSM)[50]: PSM3 can't open nic unit: 0 (err=23)
[f37b48de85b5:00051] [[3492,0],0] ORTE_ERROR_LOG: Out of resource in file util/show_help.c at line 501

This is https://bugzilla.redhat.com/show_bug.cgi?id=2142192

Christoph Junghans · Answer 1 · Tue Nov 22 2022 04:11:42 GMT+0800 (China Standard Time)

/cc @jngrad

Christoph Junghans · Answer 2 · Tue Nov 29 2022 07:27:51 GMT+0800 (China Standard Time)

@opoplawski any idea: https://github.com/votca/votca/actions/runs/3504789586/jobs/5870696578#step:6:135

Christoph Junghans · Answer 3 · Tue Nov 29 2022 07:29:10 GMT+0800 (China Standard Time)

-- Found Python: /usr/bin/python3.11 (found version "3.11.0") found components: Interpreter 
3b537707efea:pid763: PSM3 can't open nic unit: 0 (err=23)
3b537707efea:pid763: PSM3 can't open nic unit: 0 (err=23)
3b537707efea:pid763: PSM3 can't open nic unit: 0 (err=23)
3b537707efea:pid763.python3.11: Failed to get eth0 (unit 0) cpu set
3b537707efea:pid763.python3.11: Failed to get eth0 (unit 0) cpu set
3b537707efea:pid763.python3.11: Failed to get eth0 (unit 0) cpu set
3b537707efea:pid763: PSM3 can't open nic unit: 0 (err=23)
3b537707efea:pid763.python3.11: Failed to get eth0 (unit 0) cpu set
--------------------------------------------------------------------------
Open MPI failed an OFI Libfabric library call (fi_endpoint).  This is highly
unusual; your job may behave unpredictably (and/or abort) after this.

  Local host: 3b537707efea
  Location: mtl_ofi_component.c:512
  Error: Invalid argument (22)
--------------------------------------------------------------------------
3b537707efea:pid770: PSM3 can't open nic unit: 0 (err=23)
3b537707efea:pid770.python3.11: Failed to get eth0 (unit 0) cpu set
3b537707efea:pid770.python3.11: Failed to get eth0 (unit 0) cpu set
3b537707efea:pid770: PSM3 can't open nic unit: 0 (err=23)
3b537707efea:pid770.python3.11: Failed to get eth0 (unit 0) cpu set
3b537707efea:pid770: PSM3 can't open nic unit: 0 (err=23)
3b537707efea:pid770: PSM3 can't open nic unit: 0 (err=23)
3b537707efea:pid770.python3.11: Failed to get eth0 (unit 0) cpu set
--------------------------------------------------------------------------
Open MPI failed an OFI Libfabric library call (fi_endpoint).  This is highly
unusual; your job may behave unpredictably (and/or abort) after this.

  Local host: 3b537707efea
  Location: mtl_ofi_component.c:512
  Error: Invalid argument (22)
--------------------------------------------------------------------------
-- Found ESPRESSO: TRUE  
3b537707efea:pid778: PSM3 can't open nic unit: 0 (err=23)
3b537707efea:pid778.python3.11: Failed to get eth0 (unit 0) cpu set
3b537707efea:pid778: PSM3 can't open nic unit: 0 (err=23)
3b537707efea:pid778.python3.11: Failed to get eth0 (unit 0) cpu set

I am a bit confused it says Found ESPRESSO: TRUE and then fails afterwards....

Christoph Junghans · Answer 4 · Tue Nov 29 2022 08:00:36 GMT+0800 (China Standard Time)

Ok, actually the problem is import espressopp.

/CC @XzzX, can you have a look at that?

$ docker run -it ghcr.io/votca/buildenv/fedora:rawhide /bin/bash
<in docker>
$ python3 -c "import espressopp"

Sebastian Eibl · Answer 5 · Tue Nov 29 2022 18:56:51 GMT+0800 (China Standard Time)

python3 -c "import espressopp"

ModuleNotFoundError: No module named 'espressopp'

Christoph Junghans · Answer 6 · Tue Nov 29 2022 21:52:12 GMT+0800 (China Standard Time)

Have a look at votca/buildenv#186

Christoph Junghans · Answer 7 · Tue Nov 29 2022 22:01:09 GMT+0800 (China Standard Time)

python3 -c "import espressopp"

ModuleNotFoundError: No module named 'espressopp'

I disabled the espressopp build, but you can do:

$ docker run -it ghcr.io/votca/buildenv/fedora:rawhide /bin/bash
<in docker>
$ git clone https://github.com/espressopp/espressopp && \
  cmake -S espressopp -B espressopp/build -DCMAKE_INSTALL_PREFIX=/usr && \
  cmake --build espressopp/build && \
  sudo cmake --install espressopp/build && \  
  sudo pip3 install pyh5md
$ python3 -c "import espressopp"