VolodymyrChapman / Single-Cell-RNAseq-Hackathon-2022

Winning entry to Single Cell RNAseq Hackathon 2022 (University of Leeds: https://conferences.leeds.ac.uk/bad-hackathon/)

Single-Cell-RNAseq-Hackathon-2022

Introduction

Winning entry to the University of Leeds Single Cell RNAseq Hackathon 2022 (https://conferences.leeds.ac.uk/bad-hackathon/).

Challenge was to use an open access single cell RNA dataset to determine cell evolution pathways.

Libraries required

Analysed in R. Requires Seurat and Monocle3 libraries in R.

Installation as per creator instructions:

• Seurat (https://satijalab.org/seurat/articles/install.html)

• Monocle3 (https://cole-trapnell-lab.github.io/monocle3/docs/installation/)

Team details

• Amber Emmett: PhD student in Bioinformatics https://www.linkedin.com/in/amber-emmett-0a393b20a/

• Norah Almasoud: PhD student in Biostatistics / Bioinformatics https://www.linkedin.com/in/norah-almasoud-/

• Bailey Andrew: PhD student in AI for Diagnosis and Care https://www.linkedin.com/in/ethan-andrew-4867a2125/

• Volodymyr Chapman: PhD student in Digital Pathology https://www.linkedin.com/in/volodymyrchapman/