configuring threads/cores in local run
Perugolate opened this issue · comments
When running metaphor locally, what is the best way to set the number of threads available to snakemake?
I am able to configure the RAM but not the threads when I configure the settings via:
metaphor config settings
When running metaphor execute, then snakemake seems to default to 4 cores:
Snakemake will start with 4 cores
Apologies if I missed in the documentation.
Dear @Perugolate,
The recommended way is to set the number of threads with the -c command-line option. This is by design as Snakemake itself requires the number of cores to be specified in the command-line (with the same -c option).
Best,
Vini