Open Source contributions
FOSS (developer & maintainer)
- geobuffer: geographic information system (GIS) API; R package for constructing geodesic buffers using metric radii;
- plotbiomes: data visualization API; R package for plotting Whittaker biomes with ggplot2;
- bootstrapnet: data analysis & visualization API; R package for bootstrapping indices of ecological networks;
- bootdissim: data analysis & visualization API; R package for building turnover saturation curves via bootstrapping
- img-with-box-from-excel: Integrate Excel with Python for visualizing images with their corresponding bounding boxes for your AI project
Blog posts
- R - using Random Forests, Support Vector Machines and Neural Networks for a pixel based supervised classification of Sentinel-2 multispectral images
- Sharing various scripts and workflows on my personal blog at See the data
Contributions to scientific publications
As author:
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R programming for data processing, ETL & GIS operations, data analysis, visualization, bootstrapping models to simulate uncertainty, preparing & maintaining the GitHub repository for:
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Implemented data analysis, Generalized Linear Mixed Model (GLMM), Before-After-Control-Impact (BACI) design and data visualization for:
- Pardini E. A., et al. "GLMM BACI environmental impact analysis shows coastal dune restoration reduces seed predation on an endangered plant." Restoration Ecology 26.6 (2018): 1190-1194. link. Maintaining the GitHub repository here.
- Scotti A., et al. "Small hydropower—small ecological footprint? A multi-annual environmental impact analysis using aquatic macroinvertebrates as bioindicators. Part 1: Effects on community structure." Frontiers in Environmental Science (2022): 1022. link Maintaining the GitHub repository here.
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Spatial data processing and visualization for:
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Data visualization and analysis for:
- Motivans Š. E., et al. "Effects of different types of low‐intensity management on plant‐pollinator interactions in Estonian grasslands." Ecology and evolution 11.23 (2021): 16909-16926. link
- Rakosy D., et al. "Intensive grazing alters the diversity, composition and structure of plant-pollinator interaction networks in Central European grasslands." PloS one 17.3 (2022): e0263576. link
- Thompson A., et al. "Oilseed Rape Shares Abundant and Generalized Pollinators with Its Co-Flowering Plant Species." Insects 12.12 (2021): 1096. link
Acknowledged:
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Developed the text processing and data visualization scripts for:
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Data processing and visualization for:
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Contributed to data analysis and figures for:
- Crandall R. M., and Knight. T. M. "Role of multiple invasion mechanisms and their interaction in regulating the population dynamics of an exotic tree." Journal of Applied Ecology 55.2 (2018): 885-894. link.
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Provided statistical and graphical assistance for:
- Bernardo H. L., et al. "Count population viability analysis finds that interacting local and regional threats affect the viability of a rare plant." Ecological Indicators 93 (2018): 822-829. link
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Prepared figures for:
- Pardini E. A., et al. "Effects of seed density and proximity to refuge habitat on seed predation rates for a rare and a common Lupinus species." American Journal of Botany 104.3 (2017): 389-398. link.
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Prepared figures for:
- Thompson, A. H., and Knight. T. M.. "Exotic plant species receive adequate pollinator service despite variable integration into plant–pollinator networks." Oecologia 187.1 (2018): 135-142. link.
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Prepared figure (map) for:
- Bennett, J. M., et al. "GlobTherm, a global database on thermal tolerances for aquatic and terrestrial organisms." Scientific Data 5.1 (2018): 1-7. link
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Prepared figures and biodiversity metrics for:
- Vitt P., et al. "Temporal variation in the roles of exotic and native plant species in plant–pollinator networks." Ecosphere 11.2 (2020): e02981. link. Prepared fig. 3, 4, 5 & 6 in manuscript and figure S2, Appendix. Also calculated biodiversity metrics and their confidence intervals in Table S1, Appendix.