Error using alpha = "from.data"
M-Marku opened this issue · comments
Hi,
I am using dynGENIE3 on a 6-sample dataset, with 5 time points each. While setting alpha = fixed_value
works perfectly, using alpha = "from.data"
gives
Error in { :
task 2 failed - "NA/NaN/Inf in foreign function call (arg 4)"
Any idea where this error comes from, and how to solve it?
Thanks
Hi,
I would need a bit more info.
Could you run the following:
alphas <- estimate.decay.rates(TS.data, time.points)
,
where TS.data
and time.points
are the same input arguments as when calling dynGENIE3(TS.data, time.points)
,
and check if alphas
has some nan or inf values?
Indeed, there were a few NaN
values of alphas for some genes.
Thank you for your fast reply and your help.