vahuynh / GENIE3

Machine learning-based approach for the inference of gene regulatory networks from expression data.

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sklearn version issue

NehaBhojani opened this issue · comments

Traceback (most recent call last):
File "test_run.py", line 1, in
from GENIE3 import *
File "/mnt/f/SBX/GENIE3/GENIE3.py", line 1, in
from sklearn.tree.tree import BaseDecisionTree
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/init.py", line 64, in
from .base import clone
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/base.py", line 14, in
from .utils.fixes import signature
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/utils/init.py", line 14, in
from . import _joblib
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/utils/_joblib.py", line 22, in
from ..externals import joblib
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/externals/joblib/init.py", line 119, in
from .parallel import Parallel
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/externals/joblib/parallel.py", line 28, in
from ._parallel_backends import (FallbackToBackend, MultiprocessingBackend,
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/externals/joblib/_parallel_backends.py", line 22, in
from .executor import get_memmapping_executor
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/externals/joblib/executor.py", line 14, in
from .externals.loky.reusable_executor import get_reusable_executor
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/externals/joblib/externals/loky/init.py", line 12, in
from .backend.reduction import set_loky_pickler
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/externals/joblib/externals/loky/backend/reduction.py", line 125, in
from sklearn.externals.joblib.externals import cloudpickle # noqa: F401
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/externals/joblib/externals/cloudpickle/init.py", line 3, in
from .cloudpickle import *
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/externals/joblib/externals/cloudpickle/cloudpickle.py", line 152, in
_cell_set_template_code = _make_cell_set_template_code()
File "/home/nehabhojani/.local/lib/python3.8/site-packages/sklearn/externals/joblib/externals/cloudpickle/cloudpickle.py", line 133, in _make_cell_set_template_code
return types.CodeType(
TypeError: an integer is required (got type bytes)

Hi,
Which version of sklearn are you using?
I just performed a fix for version >= 0.24.