usadellab

Trimmomatic

GeneExpressionPlots

A Javascript based tool to visualize gene expression over a custom discrete variable (e.g. time) and grouped by another (e.g. tissue or genotype).

prot-scriber

Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).

MapMan2GO

Maps MapMan-Bins to compound Gene Ontology Term Annotations (GOA).

usadellab.github.io

gfftk

GFF toolkit to work with GFF files

Gene-Expression-Plotter-EOSC-Life-Demonstrator

A Javascript based tool to visualize gene expression over a custom discrete variable (e.g. time) and grouped by another (e.g. tissue or genotype). This project integrates data from 'fairdomhub'.

untwistApp

A tool for visualization of phenotypic data, GWAS analysis and some Bioinformatics tools

course

EMPHASIS-Layer

Joseph_Atemias_labbook

This repository is used to provide a Wiki that Joseph Atemia can use as a lab-book in which every step taken in scientific work is documented. Also documents that might be important can be shared here.

MapMan-Mercator-4

To reprorduce figures etc

PhysioSpaceMethods

Robina

This is Robina Arcas featuring Isoform and in the future single cell analysis. Uses Kallisto

scviz

For visualization of single cell transcriptomics.

Teaching

Just getting started with assembly and RNA

mibinet_db_spa

physiospace_shiny

A Rmarkdown shiny front-end to github.com/JRC-COMBINE/PhysioSpaceMethods

sfb1535_MibiNet_DB