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numpy
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tensorflow
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keras
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pyGaussDCA
python3 setup.py build
python3 setup.py install --user
- Output a CASP format rr file:
from gancon import *
model = gancon.get_model()
gancon.predict_rr(model,"1a2pA.fasta","1a2pA.aln","1a2pA.rr")
- Obtain a contact map prediction matrix:
from gancon import *
model = gancon.get_model()
A = gancon.predict(model,"1a2pA.fasta","1a2pA.aln")
print(A)