UCSC Treehouse Childhood Cancer Initiative's repositories
fusion-for-core
UCSC Treehouse Gene Fusion Analysis Pipeline
dngds-pipelines
DNA Nanopore Genetic Disease Study
brca-exchange
Overall management and deployment of the BRCA Exchange web portal and pipeline scripts
EMT-paper
Code for creating figures for Sanders, L.M., Cheney, A., et al., "Identification of a differentiation stall in epithelial mesenchymal transition in histone H3 mutant diffuse midline glioma"
hbtest_OpenPBTA-manuscript
The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
hexmap-data
compute server for hexmap
mini-var-call
Calls and annotates a small curated list of variants from a sorted bam file
OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
OpenPBTA-manuscript
The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
TumorMap_Cluster_Analysis
Code for analyzing how samples clusters in the Treehouse TumorMap