Center for Translational Data Science

cloud-automation

Automation for standing up Gen3 commons

data-portal

Windmill: data portal for metadata submission and query

indexd

Index service server

gen3sdk-python

Gen3 SDK for Python

gen3.org

The website for gen3.org

pypfb

Python library & CLI to create, view and edit PFB files

cdis-manifest

Manifests tracking service versions to release to each environment

guppy

Server that supports GraphQL queries on data from Elasticsearch

hatchery

dcfdictionary

gen3-qa

Integration Tests for Gen3

data-simulator

indexclient

Prototype index service client.

userdatamodel

PDC data model for user management

create-gen3-app

Create Gen3 apps without configuration.

gen3-ui-component

Base UI component in gen3

covid19_datadictionary

gitops-qa

containers

gen3-igv

IGV Web App

genomel_pipelines

GenoMEL pipelines in Bionimbus

Viewers

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

ACCESS

ACCESS - Adding Consortium ConstituEntS for Studies Frontend

BMH-admin-portal

Shared Codebase for the Biomedical Research Hub Initiative

data-ecosystem-portal

gen3-auspice

Web app for visualizing pathogen evolution

gen3-help

Used to show help pages/widgets on a per commons basis.

google-bucket-manifest

Repos to store CDIS Google dataflow templates

OrthancDocker

Docker Hub repository for Orthanc

WebAPI

OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications