Kirill Tsukanov's repositories
vimeo-audio-video
Download segmented video from Vimeo
airflow
Apache Airflow - A platform to programmatically author, schedule, and monitor workflows
Annocript
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.
cnvkit
Copy number variant detection from targeted DNA sequencing
ebi-playground
Small snippets of code for the EBI
eva-opentargets
Workflow to map ClinVar trait names to ontology terms and prepare this information for submission to OpenTargets
json_schema
Open Targets target-disease association schema
metadata-ws
Generic REST API for submission metadata objects (usable by AMP T2D, EGA and EVA)
vep-mapping-pipeline
A pipeline which uses Ensembl VEP REST API to map input variants to their most severe functional consequence and gene information