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samsa2

SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customizable reference databases.

SAMSA

Programs and documentation for the SAMSA pipeline, version 1.0

COG

Scripts and steps for making a consolidated COG database file for tools like DIAMOND.

subsystems

Code for making bioinformatics work with the SEED subsystems database a little easier.

macaqueICD

Python, R, and bash scripts used for analysis of rhesus macaque gut microbiomes for ICD

SmartAmp_PrimerDesign

A code that automatically builds primers for a Smart Amplification PCR run, using Python.

analysis-engine-samples

Public code samples for using the Priceonomics Analysis Engine

BettaMetaData

A parsing script that helps clean up BioSample metadata by trying to smooth into controlled vocabulary. Created as part of ASM NGS hackathon 2018.

DNAnexus_apps

App and applet code for the DNAnexus platform.

MG-RAST_interfacing

Scripts that making working with MG-RAST a bit easier.

gitfiti

Newton

Scholar, a Slack integration for finding relevant papers. Powered by Watson's Natural Language Understanding.

NGmerge

Merging paired-end reads and removing adapters

shi7

TravelBot

wftd_bot

A bot built for Slack, coded in Python, designed to track the number of words written in an author's group.