Sam Westreich's repositories
subsystems
Code for making bioinformatics work with the SEED subsystems database a little easier.
macaqueICD
Python, R, and bash scripts used for analysis of rhesus macaque gut microbiomes for ICD
SmartAmp_PrimerDesign
A code that automatically builds primers for a Smart Amplification PCR run, using Python.
analysis-engine-samples
Public code samples for using the Priceonomics Analysis Engine
BettaMetaData
A parsing script that helps clean up BioSample metadata by trying to smooth into controlled vocabulary. Created as part of ASM NGS hackathon 2018.
DNAnexus_apps
App and applet code for the DNAnexus platform.
MG-RAST_interfacing
Scripts that making working with MG-RAST a bit easier.
Newton
Scholar, a Slack integration for finding relevant papers. Powered by Watson's Natural Language Understanding.
NGmerge
Merging paired-end reads and removing adapters
wftd_bot
A bot built for Slack, coded in Python, designed to track the number of words written in an author's group.