tpoorten

Tom Poorten's starred repositories

base-accurate DNA sequence alignments using WFA and mashmap3

Language:C++MIT17400

The next version of bwa-mem

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perform genotype-phenotype-association tests on a VCF with logistic regression.

Language:Python2000

Generate an interactive dot plot from mummer or minimap alignments

Language:HTMLMIT19000

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

Language:PythonNOASSERTION27000

Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"

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Grammar of Graph Graphics

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Complex, interactive heatmaps in R

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finshingTool

Language:C++MIT5300

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

Language:C++GPL-3.019800

Scripts to split reference and run mummer in parallel on an SGE cluster

Language:ShellMIT1100

Sliding Window Extraction of Explicit Polymorphisms

Language:PythonMIT400

A short tutorial on how to use RSEM

GPL-3.013300

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

Language:C++MIT1900