Pkg.test("DynamicHMC") on Julia 1.5.0 gives two fails

Question

Pkg.test("DynamicHMC") on Julia 1.5.0 gives two fails

MooersLab opened this issue 4 years ago · comments

Running on a MacOS 10.15.
I was able to work the worked example in the documentation,
so I am unsure if these test failures are important.

Test Summary:     | Pass  Total
simulated meancov |    2      2
Test Summary: |    Pass    Total
test-trees.jl | 2003798  2003798
leapfrog back and forth: Test Failed at /Users/blaine/.julia/packages/DynamicHMC/83Q9C/test/test-hamiltonian.jl:171
  Expression: ≈(z.p, z1.p, norm = (x->begin
                norm(x, Inf)
            end), rtol = 0.001)
   Evaluated: [-0.7522839018993613, 0.2728057174736127] ≈ [-0.7508500824628771, 0.271725160229739] (norm=#20, rtol=0.001)
Stacktrace:
 [1] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/83Q9C/test/test-hamiltonian.jl:171
 [2] top-level scope at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
 [3] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/83Q9C/test/test-hamiltonian.jl:144
leapfrog back and forth: Test Failed at /Users/blaine/.julia/packages/DynamicHMC/83Q9C/test/test-hamiltonian.jl:171
  Expression: ≈(z.p, z1.p, norm = (x->begin
                norm(x, Inf)
            end), rtol = 0.001)
   Evaluated: [-0.02532229751461036, 0.030292707711202047] ≈ [-0.027146248766058756, 0.03115685279645941] (norm=#20, rtol=0.001)
Stacktrace:
 [1] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/83Q9C/test/test-hamiltonian.jl:171
 [2] top-level scope at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
 [3] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/83Q9C/test/test-hamiltonian.jl:144
Test Summary:                                    |  Pass  Fail  Total
test-hamiltonian.jl                              | 13260     2  13262
  Gaussian KE full                               |   400          400
  Gaussian KE diagonal                           |   400          400
  phasepoint internal consistency                |    23           23
  leapfrog calculation                           |   205          205
  leapfrog Hamiltonian invariance                | 10000        10000
  leapfrog back and forth                        |  2198     2   2200
  PhasePoint building blocks and infinite values |     9            9
  Hamiltonian and KE printing                    |     3            3
  unit normal simple HMC                         |     2            2
  normal NUTS HMC transition mean and cov        |    20           20
ERROR: LoadError: Some tests did not pass: 13260 passed, 2 failed, 0 errored, 0 broken.
in expression starting at /Users/blaine/.julia/packages/DynamicHMC/83Q9C/test/runtests.jl:17
ERROR: Package DynamicHMC errored during testing

Tamas K. Papp · Answer 1 · Thu Aug 06 2020 19:54:36 GMT+0800 (China Standard Time)

Thanks for reporting. This probably comes from a change in Julia's RNG producing different random values for the tests, which happen to be a bit more ill-conditioned than previously. I will investigate and fix, but this should be innocuous.

Blaine Mooers · Answer 2 · Thu Aug 06 2020 22:19:46 GMT+0800 (China Standard Time)

Thank you for the clarification. I suspected that this might be the case. I will carry on exploring DynamicHMC amusing all is well.

…

On Thu, Aug 6, 2020 at 6:54 AM Tamas K. Papp ***@***.***> wrote: Thanks for reporting. This probably comes from a change in Julia's RNG producing different random values for the tests, which happen to be a bit more ill-conditioned than previously. I will investigate and fix, but this should be innocuous. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#132 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADTZEC4LA34LR75KKLO3ZYDR7KKYVANCNFSM4PWALY3Q> .

-- Best regards, Blaine Blaine Mooers, Ph.D. Associate Professor Department of Biochemistry and Molecular Biology College of Medicine University of Oklahoma Health Sciences Center S.L. Young Biomedical Research Center Rm. 466 975 NE 10th Street <https://maps.google.com/?q=975+NE+10th+Street&entry=gmail&source=g>, BRC 466 Oklahoma City, OK 73104-5419 office: (405) 271-8300 lab: (405) 271-8313 Faculty webpage <http://basicsciences.ouhsc.edu/biochemmolbiol/Faculty/bio_details/TabId/11753/ArtMID/30702/ArticleID/6430/Mooers-Blaine-HM-PhD.aspx> X-ray lab (LBSF) <http://research.ouhsc.edu/CoreFacilities/LaboratoryofBiomolecularStructureandFunction.aspx> SSRL UEC <https://www-ssrl.slac.stanford.edu/content/about-ssrl/advisory-panels/ssrl-users-organization/members/ssrluo-2016-executive-committee-members> SSURF EasyPyMOL <https://github.com/MooersLab/EasyPyMOL> Molecular Graphics <https://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/moleculargraphicslinks.html> <https://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/MolecularGraphicsLinks.html> Small Angle Scattering <http://www.oumedicine.com/docs/default-source/ad-biochemistry-workfiles/small-angle-scattering-links-27aug2014.html?sfvrsn=0> office: (405) 271-8300 lab: (405) 271-8313 e-mail: blaine-mooers@ouhsc.edu (or bmooers1@gmail.com)

Tamas K. Papp · Answer 3 · Mon Aug 24 2020 19:09:50 GMT+0800 (China Standard Time)

Fixed on latest master.

Blaine Mooers · Answer 4 · Tue Aug 25 2020 06:11:44 GMT+0800 (China Standard Time)

Testing of todays version on github in Julia 15.1 on Mac OS X 15.6 progresses further, but fails on the testing of sample-correctness-utitlies.jl.

Test Summary: | Pass Total
simulated meancov | 2 2
Test Summary: | Pass Total
test-trees.jl | 2003798 2003798
Test Summary: | Pass Total
test-hamiltonian.jl | 13262 13262
Test Summary: | Pass Total
test-NUTS.jl | 32 32
Test Summary: | Pass Total
test-stepsize.jl | 1132 1132
Test Summary: | Pass Total
test-mcmc.jl | 13 13
Test Summary: | Pass Total
test-diagnostics.jl | 20 20
INFO while testing: mixture of two normals, dimension 3
ALERT some τ = [0.169, 0.184, 0.147] < 0.15
INFO while testing: elongate(1.2, 𝑁), dimension 5
ALERT extreme Anderson-Darling p ≈ 1.66e-14 < 0.0 for coordinate 1 of 5
NUTS tests with heavier tails and skewness: Test Failed at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-utilities.jl:115
Expression: p_AD ≥ pd_fail
Evaluated: 1.6572882297252903e-14 ≥ 2.0000000000000004e-7
Stacktrace:
[1] NUTS_tests(::Random._GLOBAL_RNG, ::LogDensityTestSuite.Elongate{StandardMultivariateNormal,Float64}, ::String, ::Int64; K::Int64, io::Base.TTY, mcmc_args::NamedTuple{(),Tuple{}}, R̂_alert::Float64, R̂_fail::Float64, τ_alert::Float64, τ_fail::Float64, p_alert::Float64, p_fail::Float64, EBFMI_alert::Float64, EBFMI_fail::Float64) at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-utilities.jl:115
[2] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-tests.jl:78
[3] top-level scope at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[4] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-tests.jl:75
ALERT extreme Anderson-Darling p ≈ 7.98e-14 < 0.0 for coordinate 2 of 5
NUTS tests with heavier tails and skewness: Test Failed at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-utilities.jl:115
Expression: p_AD ≥ pd_fail
Evaluated: 7.975948103200937e-14 ≥ 2.0000000000000004e-7
Stacktrace:
[1] NUTS_tests(::Random._GLOBAL_RNG, ::LogDensityTestSuite.Elongate{StandardMultivariateNormal,Float64}, ::String, ::Int64; K::Int64, io::Base.TTY, mcmc_args::NamedTuple{(),Tuple{}}, R̂_alert::Float64, R̂_fail::Float64, τ_alert::Float64, τ_fail::Float64, p_alert::Float64, p_fail::Float64, EBFMI_alert::Float64, EBFMI_fail::Float64) at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-utilities.jl:115
[2] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-tests.jl:78
[3] top-level scope at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[4] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-tests.jl:75
ALERT extreme Anderson-Darling p ≈ 2.39e-14 < 0.0 for coordinate 3 of 5
NUTS tests with heavier tails and skewness: Test Failed at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-utilities.jl:115
Expression: p_AD ≥ pd_fail
Evaluated: 2.386491241178068e-14 ≥ 2.0000000000000004e-7
Stacktrace:
[1] NUTS_tests(::Random._GLOBAL_RNG, ::LogDensityTestSuite.Elongate{StandardMultivariateNormal,Float64}, ::String, ::Int64; K::Int64, io::Base.TTY, mcmc_args::NamedTuple{(),Tuple{}}, R̂_alert::Float64, R̂_fail::Float64, τ_alert::Float64, τ_fail::Float64, p_alert::Float64, p_fail::Float64, EBFMI_alert::Float64, EBFMI_fail::Float64) at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-utilities.jl:115
[2] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-tests.jl:78
[3] top-level scope at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[4] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-tests.jl:75
ALERT extreme Anderson-Darling p ≈ 1.56e-16 < 0.0 for coordinate 4 of 5
NUTS tests with heavier tails and skewness: Test Failed at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-utilities.jl:115
Expression: p_AD ≥ pd_fail
Evaluated: 1.555009605115904e-16 ≥ 2.0000000000000004e-7
Stacktrace:
[1] NUTS_tests(::Random._GLOBAL_RNG, ::LogDensityTestSuite.Elongate{StandardMultivariateNormal,Float64}, ::String, ::Int64; K::Int64, io::Base.TTY, mcmc_args::NamedTuple{(),Tuple{}}, R̂_alert::Float64, R̂_fail::Float64, τ_alert::Float64, τ_fail::Float64, p_alert::Float64, p_fail::Float64, EBFMI_alert::Float64, EBFMI_fail::Float64) at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-utilities.jl:115
[2] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-tests.jl:78
[3] top-level scope at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[4] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-tests.jl:75
ALERT extreme Anderson-Darling p ≈ 5.94e-13 < 0.0 for coordinate 5 of 5
NUTS tests with heavier tails and skewness: Test Failed at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-utilities.jl:115
Expression: p_AD ≥ pd_fail
Evaluated: 5.938619232986046e-13 ≥ 2.0000000000000004e-7
Stacktrace:
[1] NUTS_tests(::Random._GLOBAL_RNG, ::LogDensityTestSuite.Elongate{StandardMultivariateNormal,Float64}, ::String, ::Int64; K::Int64, io::Base.TTY, mcmc_args::NamedTuple{(),Tuple{}}, R̂_alert::Float64, R̂_fail::Float64, τ_alert::Float64, τ_fail::Float64, p_alert::Float64, p_fail::Float64, EBFMI_alert::Float64, EBFMI_fail::Float64) at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-utilities.jl:115
[2] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-tests.jl:78
[3] top-level scope at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[4] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/sample-correctness-tests.jl:75
Test Summary: | Pass Fail Total
sample-correctness-tests.jl | 153 5 158
NUTS tests with random normal | 96 96
NUTS tests with specific normal distributions | 40 40
NUTS tests with mixtures | 6 6
NUTS tests with heavier tails and skewness | 11 5 16
ERROR: LoadError: Some tests did not pass: 153 passed, 5 failed, 0 errored, 0 broken.
in expression starting at /Users/blaine/.julia/packages/DynamicHMC/fy0Ju/test/runtests.jl:27
ERROR: Package DynamicHMC errored during testing

Tamas K. Papp · Answer 5 · Tue Aug 25 2020 13:55:20 GMT+0800 (China Standard Time)

Thanks. Is this the master branch of DynamicHMC?

Tamas K. Papp · Answer 6 · Fri Jan 15 2021 16:44:26 GMT+0800 (China Standard Time)

I am happy to address this but I can't replicate on Linux and Julia 1.5 or 1.6 --- I don't have access to OS X.

PRs are appreciated, just extend the bounds that fail by a minor amount.

Tamas K. Papp · Answer 7 · Tue Feb 09 2021 21:04:25 GMT+0800 (China Standard Time)

Is this still an open issue?

Blaine Mooers · Answer 8 · Thu Feb 11 2021 20:22:48 GMT+0800 (China Standard Time)

I installed julia 1.5.3 on Ubuntu and DyamicHMC and ran test on it. All was well.

On the Mac 10.15.7 with julia 1.5.3 and DymaicHMC from the default distribution installed, test returns

┌ Info: MCMC progress
│ step = 9801
│ seconds_per_step = 5.0e-6
└ estimated_seconds_left = 0.00099
┌ Info: MCMC progress
│ step = 9901
│ seconds_per_step = 5.4e-6
└ estimated_seconds_left = 0.00054
[ Info:
┌ Info: Starting MCMC
└ total_steps = 1000
[ Info:
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 0.018
└ estimated_seconds_left = 18.0
┌ Info: Starting MCMC
└ total_steps = 1000
[ Info:
[ Info:
┌ Info: MCMC progress
│ step = 1
│ seconds_per_step = 4.0e-5
└ estimated_seconds_left = 0.04
Test Summary: |
test-logging.jl | No tests
┌ Warning: (t::AbstractTransform)(x) is deprecated, use transform(t, x) instead
│ caller = rand_C(::Int64) at common.jl:118
└ @ Main ~/.julia/packages/DynamicHMC/n1LsS/test/common.jl:118
INFO while testing: mixture of two normals, dimension 3
ALERT some τ = [0.169, 0.184, 0.147] < 0.15
INFO while testing: elongate(1.2, 𝑁), dimension 5
ALERT extreme Anderson-Darling p ≈ 1.66e-14 < 0.0 for coordinate 1 of 5
NUTS tests with heavier tails and skewness: Test Failed at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-utilities.jl:115
Expression: p_AD ≥ pd_fail
Evaluated: 1.6572882297252903e-14 ≥ 2.0000000000000004e-7
Stacktrace:
[1] NUTS_tests(::Random._GLOBAL_RNG, ::LogDensityTestSuite.Elongate{StandardMultivariateNormal,Float64}, ::String, ::Int64; K::Int64, io::Base.TTY, mcmc_args::NamedTuple{(),Tuple{}}, R̂_alert::Float64, R̂_fail::Float64, τ_alert::Float64, τ_fail::Float64, p_alert::Float64, p_fail::Float64, EBFMI_alert::Float64, EBFMI_fail::Float64) at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-utilities.jl:115
[2] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-tests.jl:78
[3] top-level scope at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[4] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-tests.jl:75
ALERT extreme Anderson-Darling p ≈ 7.98e-14 < 0.0 for coordinate 2 of 5
NUTS tests with heavier tails and skewness: Test Failed at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-utilities.jl:115
Expression: p_AD ≥ pd_fail
Evaluated: 7.975948103200937e-14 ≥ 2.0000000000000004e-7
Stacktrace:
[1] NUTS_tests(::Random._GLOBAL_RNG, ::LogDensityTestSuite.Elongate{StandardMultivariateNormal,Float64}, ::String, ::Int64; K::Int64, io::Base.TTY, mcmc_args::NamedTuple{(),Tuple{}}, R̂_alert::Float64, R̂_fail::Float64, τ_alert::Float64, τ_fail::Float64, p_alert::Float64, p_fail::Float64, EBFMI_alert::Float64, EBFMI_fail::Float64) at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-utilities.jl:115
[2] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-tests.jl:78
[3] top-level scope at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[4] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-tests.jl:75
ALERT extreme Anderson-Darling p ≈ 2.39e-14 < 0.0 for coordinate 3 of 5
NUTS tests with heavier tails and skewness: Test Failed at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-utilities.jl:115
Expression: p_AD ≥ pd_fail
Evaluated: 2.386491241178068e-14 ≥ 2.0000000000000004e-7
Stacktrace:
[1] NUTS_tests(::Random._GLOBAL_RNG, ::LogDensityTestSuite.Elongate{StandardMultivariateNormal,Float64}, ::String, ::Int64; K::Int64, io::Base.TTY, mcmc_args::NamedTuple{(),Tuple{}}, R̂_alert::Float64, R̂_fail::Float64, τ_alert::Float64, τ_fail::Float64, p_alert::Float64, p_fail::Float64, EBFMI_alert::Float64, EBFMI_fail::Float64) at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-utilities.jl:115
[2] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-tests.jl:78
[3] top-level scope at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[4] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-tests.jl:75
ALERT extreme Anderson-Darling p ≈ 1.56e-16 < 0.0 for coordinate 4 of 5
NUTS tests with heavier tails and skewness: Test Failed at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-utilities.jl:115
Expression: p_AD ≥ pd_fail
Evaluated: 1.555009605115904e-16 ≥ 2.0000000000000004e-7
Stacktrace:
[1] NUTS_tests(::Random._GLOBAL_RNG, ::LogDensityTestSuite.Elongate{StandardMultivariateNormal,Float64}, ::String, ::Int64; K::Int64, io::Base.TTY, mcmc_args::NamedTuple{(),Tuple{}}, R̂_alert::Float64, R̂_fail::Float64, τ_alert::Float64, τ_fail::Float64, p_alert::Float64, p_fail::Float64, EBFMI_alert::Float64, EBFMI_fail::Float64) at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-utilities.jl:115
[2] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-tests.jl:78
[3] top-level scope at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[4] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-tests.jl:75
ALERT extreme Anderson-Darling p ≈ 5.94e-13 < 0.0 for coordinate 5 of 5
NUTS tests with heavier tails and skewness: Test Failed at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-utilities.jl:115
Expression: p_AD ≥ pd_fail
Evaluated: 5.938619232986046e-13 ≥ 2.0000000000000004e-7
Stacktrace:
[1] NUTS_tests(::Random._GLOBAL_RNG, ::LogDensityTestSuite.Elongate{StandardMultivariateNormal,Float64}, ::String, ::Int64; K::Int64, io::Base.TTY, mcmc_args::NamedTuple{(),Tuple{}}, R̂_alert::Float64, R̂_fail::Float64, τ_alert::Float64, τ_fail::Float64, p_alert::Float64, p_fail::Float64, EBFMI_alert::Float64, EBFMI_fail::Float64) at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-utilities.jl:115
[2] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-tests.jl:78
[3] top-level scope at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1115
[4] top-level scope at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/sample-correctness-tests.jl:75
Test Summary: | Pass Fail Total
sample-correctness-tests.jl | 153 5 158
NUTS tests with random normal | 96 96
NUTS tests with specific normal distributions | 40 40
NUTS tests with mixtures | 6 6
NUTS tests with heavier tails and skewness | 11 5 16
ERROR: LoadError: Some tests did not pass: 153 passed, 5 failed, 0 errored, 0 broken.
in expression starting at /Users/blaine/.julia/packages/DynamicHMC/n1LsS/test/runtests.jl:28
ERROR: Package DynamicHMC errored during testing

Tamas K. Papp · Answer 9 · Thu Feb 11 2021 20:30:02 GMT+0800 (China Standard Time)

Thank you for running these. These are extreme p-values and indicate something suspicious is going on, but I cannot debug further without access to OS X.

Can you please try with Julia 1.6 on OS X and DynamicHMC 3.0.0?

Blaine Mooers · Answer 10 · Thu Feb 11 2021 21:27:49 GMT+0800 (China Standard Time)

I did as requested. All tests passed. There is a warning. I will wait for a response and then I plan to close this issue.

Test Summary: |
test-logging.jl | No tests
┌ Warning: (t::AbstractTransform)(x) is deprecated, use transform(t, x) instead
│ caller = rand_C(K::Int64) at common.jl:118
└ @ Main ~/.julia/packages/DynamicHMC/J48he/test/common.jl:118
INFO while testing: mixture of two normals, dimension 3
ALERT some τ = [0.164, 0.158, 0.139] < 0.15
Test Summary: | Pass Total
sample-correctness-tests.jl | 170 170
Testing DynamicHMC tests passed

Tamas K. Papp · Answer 11 · Thu Feb 11 2021 21:43:50 GMT+0800 (China Standard Time)

The warnings are OK, some are expected (otherwise the errors would be hair-trigger).

Thanks again for investigating this.

Blaine Mooers · Answer 12 · Thu Feb 11 2021 21:56:06 GMT+0800 (China Standard Time)

I am closing this issue.