Version 0.8 breaks conda invocation on Linux
brandon-leapyear opened this issue · comments
Running tox in CI shows an error:
conda: error: argument command: invalid choice: '/home/circleci/miniconda/bin/conda'
(choose from 'info', 'help', 'list', 'search', 'create', 'install', 'update', 'upgrade',
'remove', 'uninstall', 'config', 'clean', 'package')
This only happens in CI; locally on Mac with 0.8 works fine.
OS: Debian 8 (Docker image: circleci/python:3.6.3)
miniconda version: 4.3.31
Full output log
$ PATH=/home/circleci/miniconda/bin:$PATH python/tox.sh -edocs -vvvvvvusing tox.ini: /home/circleci/project/python/tox.ini (pid 1517)
removing /home/circleci/project/python/.tox/log
could not satisfy requires PackageNotFoundError('tox-conda',)
could not satisfy requires PackageNotFoundError('tox-wheel',)
using tox-3.23.0 from /usr/local/lib/python3.6/site-packages/tox/init.py (pid 1517)
/usr/local/bin/python (/usr/local/bin/python) is {'executable': '/usr/local/bin/python', 'implementation': 'CPython', 'version_info': [3, 6, 3, 'final', 0], 'version': '3.6.3 (default, Dec 12 2017, 16:40:53) \n[GCC 4.9.2]', 'is_64': True, 'sysplatform': 'linux', 'extra_version_info': None}
.tox uses /usr/local/bin/python
.tox start: getenv /home/circleci/project/python/.tox/.tox
.tox reusing: /home/circleci/project/python/.tox/.tox
.tox finish: getenv /home/circleci/project/python/.tox/.tox after 0.04 seconds
.tox start: finishvenv
.tox finish: finishvenv after 0.00 seconds
.tox start: provision
[1603] /home/circleci/project$ /home/circleci/project/python/.tox/.tox/bin/python -m tox -c python/tox.ini -edocs -vvvvvv
using tox.ini: /home/circleci/project/python/tox.ini (pid 1603)
using tox-3.23.0 from /home/circleci/project/python/.tox/.tox/lib/python3.6/site-packages/tox/init.py (pid 1603)
docs start: packaging
docs cannot reuse: no previous config /home/circleci/project/python/.tox/docs/.tox-config1
docs create: /home/circleci/project/python/.tox/docs
removing /home/circleci/project/python/.tox/docs
[1985] /home/circleci/project$ /home/circleci/miniconda/bin/conda -h >python/.tox/log/docs-0.log
python (/home/circleci/miniconda/bin/python) is {'executable': '/home/circleci/miniconda/bin/python', 'implementation': 'CPython', 'version_info': [3, 6, 3, 'final', 0], 'version': '3.6.3 |Anaconda, Inc.| (default, Nov 20 2017, 20:41:42) \n[GCC 7.2.0]', 'is_64': True, 'sysplatform': 'linux', 'extra_version_info': None}
docs uses None
setting PATH=/home/circleci/project/python/.tox/docs/bin:/home/circleci/miniconda/bin:/home/circleci/miniconda/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
[1991] /home/circleci/project/python/.tox$ /home/circleci/miniconda/bin/conda create --yes -p docs python=3.9 >log/docs-1.log
docs uses /home/circleci/project/python/.tox/docs/bin/python
docs installdeps: -rrequirements/docs-requirements.txt, -crequirements/docs-constraints.txt
setting PATH=/home/circleci/project/python/.tox/docs/bin:/home/circleci/miniconda/bin:/home/circleci/miniconda/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
[2013] /home/circleci/project/python$ /home/circleci/project/python/.tox/docs/bin/python -m pip install -rrequirements/docs-requirements.txt -crequirements/docs-constraints.txt
usage: conda [-h] [-V] command ...
conda: error: argument command: invalid choice: '/home/circleci/miniconda/bin/conda' (choose from 'info', 'help', 'list', 'search', 'create', 'install', 'update', 'upgrade', 'remove', 'uninstall', 'config', 'clean', 'package')
ERROR: invocation failed (exit code 2)
docs wheel-make: cleaning up build directory ...
docs start: wheel-make
docs wheel-make: commands[0] | python /home/circleci/project/python/setup.py bdist_wheel --dist-dir /home/circleci/project/python/.tox/dist
setting PATH=/home/circleci/project/python/.tox/docs/bin:/home/circleci/miniconda/bin:/home/circleci/miniconda/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
[2018] /home/circleci/project/python$ /home/circleci/project/python/.tox/docs/bin/python setup.py bdist_wheel --dist-dir /home/circleci/project/python/.tox/dist
usage: conda [-h] [-V] command ...
conda: error: argument command: invalid choice: '/home/circleci/miniconda/bin/conda' (choose from 'info', 'help', 'list', 'search', 'create', 'install', 'update', 'upgrade', 'remove', 'uninstall', 'config', 'clean', 'package')
ERROR: InvocationError for command /home/circleci/project/python/.tox/docs/bin/python setup.py bdist_wheel --dist-dir /home/circleci/project/python/.tox/dist (exited with code 2)
docs finish: wheel-make after 0.28 seconds
ERROR: No dist directory found. Please check setup.py, e.g with:
python setup.py bdist_wheel
.tox finish: provision after 6.17 seconds
cc @AntoineD
The conda run command seems available since conda version 3.6.0 in 2014.
What is you version of conda?
I put it in the description. 4.3.31
This is probably the version of miniconda, not of the conda command line tool.
What gives conda --version?
$ /home/circleci/miniconda/bin/conda --version
conda 4.3.31
What gives conda --help?
I don't have the CI environment anymore, but on Mac, I get
usage: conda [-h] [-V] command ...
conda is a tool for managing and deploying applications, environments and packages.
Options:
positional arguments:
command
info Display information about current conda install.
help Displays a list of available conda commands and their help
strings.
list List linked packages in a conda environment.
search Search for packages and display their information. The input
is a Python regular expression. To perform a search with a
search string that starts with a -, separate the search from
the options with --, like 'conda search -- -h'. A * in the
results means that package is installed in the current
environment. A . means that package is not installed but is
cached in the pkgs directory.
create Create a new conda environment from a list of specified
packages.
install Installs a list of packages into a specified conda
environment.
update Updates conda packages to the latest compatible version. This
command accepts a list of package names and updates them to
the latest versions that are compatible with all other
packages in the environment. Conda attempts to install the
newest versions of the requested packages. To accomplish
this, it may update some packages that are already installed,
or install additional packages. To prevent existing packages
from updating, use the --no-update-deps option. This may
force conda to install older versions of the requested
packages, and it does not prevent additional dependency
packages from being installed. If you wish to skip dependency
checking altogether, use the '--force' option. This may
result in an environment with incompatible packages, so this
option must be used with great caution.
upgrade Alias for conda update. See conda update --help.
remove Remove a list of packages from a specified conda environment.
uninstall Alias for conda remove. See conda remove --help.
config Modify configuration values in .condarc. This is modeled
after the git config command. Writes to the user .condarc
file (/Users/bchinn/.condarc) by default.
clean Remove unused packages and caches.
package Low-level conda package utility. (EXPERIMENTAL)
optional arguments:
-h, --help Show this help message and exit.
-V, --version Show the conda version number and exit.
other commands, such as "conda build", are available when additional conda
packages (e.g. conda-build) are installed
I doubt it's the conda CLI interface, since 0.8 works on Mac
Why does it work on Mac then? conda run shouldn't exist on Mac either
What is your version of conda on Mac?
The same
moved to #75
@ailin-nemui
This looks like to be a different problem, would you mind to create a separate issue please?
@brandon-leapyear
I guess you may have to update your conda.
What does it work on Mac but not Linux?
I'm sorry but I have no idea and I cannot test on a Mac.
well we solved it by pinning tox-conda to < 0.8. It would be nice if tox-conda could specify (at least in README and/or CHANGELOG) what version of miniconda it requires
Will do once I've figured out which versions of conda provide it!
Closing now the docs has been updated.