Xuefei Zhang's repositories
HSC-pipeline
Super-resolution imaging informed scRNA sequencing analysis reveals the critical role of GDF-15 in rejuvenating aged hematopoietic stem cells
python-cheatsheet
All-inclusive Python cheatsheet
awesome-chatgpt-api
Curated list of apps and tools that not only use the new ChatGPT API, but also allow users to configure their own API keys, enabling free and on-demand usage of their own quota.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
ChatGPT
🔮 ChatGPT Desktop Application (Mac, Windows and Linux)
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
dockerlabs
Docker - Beginners | Intermediate | Advanced
dynmethods
A collection of 50+ trajectory inference methods within a common interface 📥📤
fanqiang
科学上网
GraVisGUI
A network-based shape descriptor
MiNA
MiNA (Mitochondrial Network Analysis) is a project aimed at making the analysis and characterization of mitochondrial network morphology more accurate, faster, and objective. This project currently consists of a set of Python scripts (and JAVA for the user interface) for the Fiji distribution of ImageJ.
mitomorphology
mitomorphology
orchest
Build data pipelines, the easy way 🛠️
oxforddown
Template for writing an Oxford University thesis in R Markdown; uses the OxThesis LaTeX template and was inspired by thesisdown.
SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
SCENT
Estimation of Single-Cell Potency with Single Cell Entropy
scRNA-seq_notes
A list of scRNA-seq analysis tools
scTCMSecond
Single-cell transcriptome cluster marker significance evaluation and co-expression network dynamics
seqNMF
An algorithm for unsupervised discovery of sequential structure
seurat
R toolkit for single cell genomics
singularity-userdocs
User Documentation for SingularityCE.
Statistical-Learning-Methods
Implement Statistical Learning Methods, Li Hang the hard way. 李航《统计学习方法》一书的硬核 Python 实现
tsfel
An intuitive library to extract features from time series.
xaringan
Presentation Ninja 幻灯忍者 · 写轮眼