Torfinn Nome's repositories
evernote-export
Scripts I used when moving away from Evernote.
slurm-utils
Random scripts we've implemented at our local Slurm based cluster.
wdist
WDIST (Weighted DISTance calculator) tool supporting the BGI Cognitive Genomics Lab's data analysis pipeline, and designed to grow into a full-scale replacement for PLINK (eta early 2014). Since it uses streaming algorithms instead of keeping the entire dataset in memory, it can handle much larger files without the need for e.g. tedious chromosome splitting. It also incorporates numerous micro- (and a few macro-) optimizations which collectively speed up most of PLINK's slowest functions by factors exceeding 100x (and sometimes even exceeding 1000x).
ansible-galaxy
An Ansible role for managing a Galaxy server
ansible-nels_storage
Ansible role for installing NeLS Storage import and export tools in Galaxy
ansible-slurm
Ansible role for installing and managing the Slurm Workload Manager
cigeneR
Different useful R functions for bioinformaticians
dagobah-training
Galaxy Admin Training
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
galaxy
Data intensive science for everyone.
galaxy-admin-training-barcelona-2020
My Ansible training directories
galaxy-admin-training-singularity
Deployment of a Galaxy server using Singularity for running jobs
galaxy-tools
FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.
infrastructure-playbook
Ansible playbooks for managing usegalaxy.no.
linuxbrew-automation
The code to build & install all the required software to run an Ensembl site.
r_workshops
Repository for the CIGENE R workshops.
scripts
Assorted scripts
slurmmon
gather and plot data about Slurm scheduling and job statistics
snptranslate
Translates between SNP formats
tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
training-material
A collection of Galaxy-related training material
usegalaxy-eu-tools
List of tools included in https://usegalaxy.eu
usegalaxy-no-tools
Tool yaml files for usegalaxy.no
