Torfinn Nome (torfinnnome)

torfinnnome

Geek Repo

Company:Norwegian University of Life Sciences

Location:Oslo, Norway

Home Page:http://torfinnnome.com/

Twitter:@torfinnnome

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Torfinn Nome's repositories

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

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evernote-export

Scripts I used when moving away from Evernote.

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slurm-utils

Random scripts we've implemented at our local Slurm based cluster.

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wdist

WDIST (Weighted DISTance calculator) tool supporting the BGI Cognitive Genomics Lab's data analysis pipeline, and designed to grow into a full-scale replacement for PLINK (eta early 2014). Since it uses streaming algorithms instead of keeping the entire dataset in memory, it can handle much larger files without the need for e.g. tedious chromosome splitting. It also incorporates numerous micro- (and a few macro-) optimizations which collectively speed up most of PLINK's slowest functions by factors exceeding 100x (and sometimes even exceeding 1000x).

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ansible-galaxy

An Ansible role for managing a Galaxy server

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ansible-nels_storage

Ansible role for installing NeLS Storage import and export tools in Galaxy

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ansible-slurm

Ansible role for installing and managing the Slurm Workload Manager

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cigeneR

Different useful R functions for bioinformaticians

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dagobah-training

Galaxy Admin Training

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deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

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galaxy

Data intensive science for everyone.

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galaxy-admin-training-barcelona-2020

My Ansible training directories

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galaxy-admin-training-singularity

Deployment of a Galaxy server using Singularity for running jobs

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galaxy-tools

FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.

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infrastructure-playbook

Ansible playbooks for managing usegalaxy.no.

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linuxbrew-automation

The code to build & install all the required software to run an Ensembl site.

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r_workshops

Repository for the CIGENE R workshops.

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scripts

Assorted scripts

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slurmmon

gather and plot data about Slurm scheduling and job statistics

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snptranslate

Translates between SNP formats

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tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

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training-material

A collection of Galaxy-related training material

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usegalaxy-eu-tools

List of tools included in https://usegalaxy.eu

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usegalaxy-no-tools

Tool yaml files for usegalaxy.no

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