WDIST (Weighted DISTance calculator) tool supporting the BGI Cognitive Genomics Lab's data analysis pipeline, and designed to grow into a full-scale replacement for PLINK (eta early 2014). Since it uses streaming algorithms instead of keeping the entire dataset in memory, it can handle much larger files without the need for e.g. tedious chromosome splitting. It also incorporates numerous micro- (and a few macro-) optimizations which collectively speed up most of PLINK's slowest functions by factors exceeding 100x (and sometimes even exceeding 1000x).
An Ansible role for managing a Galaxy server
Ansible role for installing NeLS Storage import and export tools in Galaxy
Ansible role for installing and managing the Slurm Workload Manager
Different useful R functions for bioinformaticians
Galaxy Admin Training
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Data intensive science for everyone.
My Ansible training directories
Deployment of a Galaxy server using Singularity for running jobs
FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.
Ansible playbooks for managing usegalaxy.no.
The code to build & install all the required software to run an Ensembl site.
Repository for the CIGENE R workshops.
gather and plot data about Slurm scheduling and job statistics
Translates between SNP formats
Tool Shed repositories maintained by the Intergalactic Utilities Commission
A collection of Galaxy-related training material
List of tools included in https://usegalaxy.eu
Tool yaml files for usegalaxy.no