imputation-accuracy

There are 1 repository under imputation-accuracy topic.

• selfdecode / rd-imputation-accuracy

  Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.

  imputationphasingaccuracyimputation-accuracybeagleimputeminimaceaglegeneticsgenotypeshapeit
  Language:Python 21

• inzilico / imputeqc

  An R package to estimate the quality of imputation of genotypes.

  imputation-accuracygenotypesimputationfastphasebioinformaticsbeagle
  Language:R 8

• cth / grspwr

  power calculator for Genetic Risk Scores (GRS)

  geneticsimputation-accuracystatisticsgenetic-risk-scorepolygenic-risk-scores
  Language:R 2

• sonisarm / Technical-validation-of-imputation

  Asses the validity of imputation of your low-coverage samples

  imputationimputation-accuracylow-coverage-sequencing
  Language:R 2

• stefanedwards / Siccuracy

  Stefan's imputation accuracy package

  genotypeimputationimputation-accuracy
  Language:HTML 2