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Damon Da Tong (tongda)

tongda

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Company:23mofang

Location:Chengdu

Home Page:tong.im

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Damon Da Tong's starred repositories

kops

Kubernetes Operations (kOps) - Production Grade k8s Installation, Upgrades and Management

Language:GoLicense:Apache-2.0Stargazers:15878Issues:318Issues:5145

gost

GO Simple Tunnel - a simple tunnel written in golang

Language:GoLicense:MITStargazers:15825Issues:320Issues:935

allennlp

An open-source NLP research library, built on PyTorch.

Language:PythonLicense:Apache-2.0Stargazers:11740Issues:280Issues:2557

jupyter-themes

Custom Jupyter Notebook Themes

Language:CSSLicense:MITStargazers:9762Issues:157Issues:399

autoscaler

Autoscaling components for Kubernetes

Language:GoLicense:Apache-2.0Stargazers:7993Issues:139Issues:2297

gcn

Implementation of Graph Convolutional Networks in TensorFlow

Language:PythonLicense:MITStargazers:7094Issues:157Issues:194

apistar

The Web API toolkit. 🛠

Language:PythonLicense:BSD-3-ClauseStargazers:5573Issues:167Issues:311

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Language:PythonLicense:BSD-3-ClauseStargazers:3183Issues:156Issues:824

nextflow

A DSL for data-driven computational pipelines

Language:GroovyLicense:Apache-2.0Stargazers:2707Issues:87Issues:3238

deeplearning-biology

A list of deep learning implementations in biology

Stargazers:2003Issues:230Issues:3

pipsi

pip script installer

Language:PythonLicense:NOASSERTIONStargazers:2002Issues:44Issues:115

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

Stargazers:1880Issues:179Issues:3

gatk

Official code repository for GATK versions 4 and up

Language:JavaLicense:NOASSERTIONStargazers:1683Issues:155Issues:4549

deepbayes-2018

Seminars DeepBayes Summer School 2018

Language:Jupyter NotebookStargazers:1045Issues:79Issues:6

adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

Language:ScalaLicense:Apache-2.0Stargazers:997Issues:100Issues:1199

hail

Cloud-native genomic dataframes and batch computing

Language:PythonLicense:MITStargazers:975Issues:56Issues:2413

cp-helm-charts

The Confluent Platform Helm charts enable you to deploy Confluent Platform services on Kubernetes for development, test, and proof of concept environments.

Language:MustacheLicense:Apache-2.0Stargazers:787Issues:286Issues:309

awesome-nextflow

A curated list of nextflow based pipelines

License:CC0-1.0Stargazers:569Issues:34Issues:2

ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

Stargazers:367Issues:55Issues:3

mlss2018-madrid-gan

MLSS 2018 Madrid lecture materials on Generative Adversarial Networks (GANs)

Language:Jupyter NotebookStargazers:179Issues:20Issues:0

gtc2vcf

Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF

Language:CLicense:MITStargazers:140Issues:9Issues:75

gcp-variant-transforms

GCP Variant Transforms

Language:PythonLicense:Apache-2.0Stargazers:135Issues:18Issues:238

GenomicsDB

GenomicsDB

Language:C++License:NOASSERTIONStargazers:111Issues:37Issues:50

OligoMiner

Genome-scale design tool for oligo hybridization probes

Language:PythonLicense:MITStargazers:57Issues:12Issues:25

genepattern-notebook

Platform for integrating genomic analysis with Jupyter Notebooks.

Language:PythonLicense:BSD-3-ClauseStargazers:44Issues:15Issues:1

docker-awscli

awscli container using official python docker

License:GPL-2.0Stargazers:35Issues:1Issues:2

mrbait

Pipeline for universal design of target-enrichment probes from various sources of genomic data.

Language:PythonLicense:GPL-3.0Stargazers:24Issues:3Issues:22

seqr-loading-pipelines

hail-based pipelines for annotating variant callsets and exporting them to elasticsearch

Language:PythonLicense:MITStargazers:22Issues:24Issues:301

k8s-on-aws-workshop

Stargazers:9Issues:5Issues:0

illuminaio

🔬 R package: This is the Bioconductor devel version of the illuminaio package.

Language:RStargazers:6Issues:5Issues:24