Tomáš Brůna's repositories
orthodb-clades
Generation of OrthoDB protein sets for gene prediction experiments
miniprothint
Miniprothint selects a set of reliable gene prediction hints from miniprot alignments scored by miniprot boundary scorer.
pollen-predictions
Final Project for Georgia Tech's Biostatistics class focusing on Atlanta's pollen levels predictions
bioconda-recipes
Conda recipes for the bioconda channel.
miniprot-boundary-scorer
Miniprot boundary scorer parses introns, starts, stops and exons from miniprot's alignment output and scores them based on local alignment quality
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
diamond
Accelerated BLAST compatible local sequence aligner.
Folder-Structure-Conventions
Folder / directory structure options and naming conventions for software projects
gitignore
A collection of useful .gitignore templates
Liftoff
An accurate GFF3/GTF lift over pipeline
nemo
File browser for Cinnamon
ProtHint
Protein hint generation pipeline for gene finding in eukaryotic genomes
pyrodigal
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
wdl
Workflow Description Language - Specification and Implementations