tkosciol

q2-notebooks

agp-mental-health

This repository will contain notebooks and useful information regarding a subset of the American Gut Project. The subset includes individuals who indicated mental health issues in the survey, along with matched controls for these individuals.

american-gut-analyses

american-gut-web

The website for the American Gut Project participant portal

calour

exploratory and interactive microbiome analyses based on heatmaps

cmi-workshops

ggmap

Knight-Lab-public-code

labadmin

Administration website for the Knight Lab

map_align

Contact map alignment

micronota

annotation pipeline for microbial genomes and metagenomes

mmseqs2_example

oecophylla

shotgun pipeline

q2-american-gut

A QIIME2 plugin for working with and processing American Gut data

q2-diversity

qiita

Qiita - A multi-omics databasing effort

RRcontacts

tkosciol.github.io

ucl_software_carpentry

Materials for the UCL software carpentry