Trang Truong's repositories

Hanhan_Data_Science_Practice

data analysis, big data development, cloud, and any other cool things!

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IntroDataScience

Book: Pratitioner's Guide to Data Science (https://scientistcafe.com/ids/)

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preNivolumabOnNivolumab

EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment

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training-collection

Collection of bioinformatics training materials

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clusterProfiler

:bar_chart: A universal enrichment tool for interpreting omics data

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how_are_we_stranded_here

Check strandedness of RNA-Seq fastq files

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galaxy-tricks

Useful tricks and tipps for Galaxy users

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containers-introduction-training

Course website "Docker and Singularity for reproducible research: getting started with containers"

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awesome-r

A curated list of awesome R frameworks, libraries and software.

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cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

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admin-training

Galaxy Admin Training

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autism_rnaseq

Collaboration with Chetty lab to analyze Autism RNA-seq datasets

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singularity

Singularity has been EOL'ed, see Apptainer

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covarr-de

Covariate model selection, differential and network expression.

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Brain_genomic_data

Brain-related -omics data

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easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

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RNA-seq

RNA-seq alignment and analysis pipeline

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open-data-registry

A registry of publicly available datasets on AWS

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transcriptutorial

This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL

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tithuytrang.github.io

Website project

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penda

PenDA is a rank-based method for personalized differential analysis.

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omnipath-to-hipathia

Parser to use omnipath networks from hipathia

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csuWGCNA

Combination of signed and unsigned WGCNA

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article-epub

Tool to convert scientific articles available as HTML to EPUB

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Anki_FDeluxe

Conversion of flashcards from Anki to Flashcards Deluxe

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Virtual_Screening_analysis-visuals

Virtual screening results: data analysis and visualizations

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SchrodingerWorkflow

Workflows for virtual screening process on Schrodinger software

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