Trang Truong's repositories
Hanhan_Data_Science_Practice
data analysis, big data development, cloud, and any other cool things!
IntroDataScience
Book: Pratitioner's Guide to Data Science (https://scientistcafe.com/ids/)
preNivolumabOnNivolumab
EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
training-collection
Collection of bioinformatics training materials
clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
how_are_we_stranded_here
Check strandedness of RNA-Seq fastq files
galaxy-tricks
Useful tricks and tipps for Galaxy users
containers-introduction-training
Course website "Docker and Singularity for reproducible research: getting started with containers"
awesome-r
A curated list of awesome R frameworks, libraries and software.
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
admin-training
Galaxy Admin Training
autism_rnaseq
Collaboration with Chetty lab to analyze Autism RNA-seq datasets
singularity
Singularity has been EOL'ed, see Apptainer
covarr-de
Covariate model selection, differential and network expression.
rworkshop-practicals
For teaching
Brain_genomic_data
Brain-related -omics data
easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
RNA-seq
RNA-seq alignment and analysis pipeline
open-data-registry
A registry of publicly available datasets on AWS
transcriptutorial
This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
tithuytrang.github.io
Website project
penda
PenDA is a rank-based method for personalized differential analysis.
omnipath-to-hipathia
Parser to use omnipath networks from hipathia
csuWGCNA
Combination of signed and unsigned WGCNA
article-epub
Tool to convert scientific articles available as HTML to EPUB
Anki_FDeluxe
Conversion of flashcards from Anki to Flashcards Deluxe
Virtual_Screening_analysis-visuals
Virtual screening results: data analysis and visualizations
SchrodingerWorkflow
Workflows for virtual screening process on Schrodinger software