timedreamer / riceTFs

Analyze rice TF RNA-Seq and ChIP-Seq

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OsNAC127/129 few peaks

timedreamer opened this issue · comments

In the paper, it says:

After sequencing, 185, 6125, 220, 455 peaks were finally obtained respectively in OX127H, OX127N, OX129H and OX129N.

However, I got: 52--> NAC127H; 179--> NAC127N; 132-->NAC129H; 139-->NAC129N.

I tried some several settings in masc2, but always have fewer peaks than reported.
The method that got more peaks would be analyzing three reps individually with the control. Then combine all the peaks.