Timothy Wu's repositories
PyloricNetwork
Implementation of the pyloric network of the lobster somatogastric ganglion system of Prinz, Marder, et al.
krasnowlab_utilities
A collection of scripts for common data management and processing tasks
forward
Sherlock Port Forwarding Utility
cs233_gtda_hw4
Starter code for HW4 of CS233: Geometric and Topological Data Analysis @Stanford.
seurat
R toolkit for single cell genomics
dotdotdot
Example vignette for dotdotdot software
docker-stacks
Ready-to-run Docker images containing Jupyter applications
aegea
Amazon Web Services Operator Interface
docker-cellranger
Code for docker image containing software for alignment of scRNA-seq reads
dca
Deep count autoencoder for denoising scRNA-seq data
BIOC281
Repository for BIOC 281: Introduction to Single Cell Expression Analysis
tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
fullforce_APPPHYS293
Final project for APPPHY293 course 2023
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.