Thomas Carroll's repositories
Detecting_Metastasis_Doorways_in_Breast_Cancer_with_ZeroCostDL4Mic
This is a Google Colab notebook based on ZeroCostDL4Mic for training a Deep Learning model (YOLOv2) and predicting TMEM doorways (blood vessel intravasation sites for tumor cells) in FFPE-fixed tumor tissues.
tidy-animated-verbs
Animations of tidyverse verbs using R, the tidyverse, and gganimate
BioC2019
BioC2019: Where Software and Biology Connect
Cell_Tracking
An ImageJ/Fiji macro for cell tracking in time-lapse movies
CLIPflexR
New repo based on clipr from BRC/RU
conda-deps
Generate conda environment files from Python and R source code
deepTools
Tools to process and analyze deep sequencing data.
devcontainers-rstudio
Zero-setup R workshops with GitHub Codespaces
Digits_recognition_OpenCV_Python
A Google Colab notebook for recognizing LCD panel digits using OpenCV and Python
docker-plumber-nginx-letsencrypt
Example repository showing how to get plumber, nginx, and Let's Encrypt all working together nicely with Docker Compose
Herper
The Herper package is a simple toolset to install and manage Conda packages and environments from R.
igvShiny
an htmlwidget version of igv, for RStudio and Shiny apps
Intro_To_R_1Day-1
Introduction to R training course
Invadopodia_tracker
Tracking invadopodia (fluorescent micron size dots) in time-lapse movies of cancer cells
libBigWig
A C library for handling bigWig files
morgani-et-al_2018
Data and code for Morgani et al (2018) in Developmental Biology
openai-cookbook
Examples and guides for using the OpenAI API
PASCAL_VOC_xml_generator_ImageJ_Fiji
This macro converts rectangle ROIs saved in ImageJ/Fiji to Pascal VOC xml format.
QENIE
Correlation-based approach for identification of endocrine interactions
Rfastp
Wrapper for fastp in R
rhumba
The R package manager that is blazingly fast ⚡. Powered by mamba.
saiz-et-al_2020
Data and code for the article by Saiz et al deposited in biorXiv
seamless_communication
Foundational Models for State-of-the-Art Speech and Text Translation
shiny-session-info
A Shiny app showing the types of session information stored in Shiny
Younger_Herre_Vosshall2020
Data and code associated with Mosquito Odor Code (MOC) paper