Jan Zimmermann's repositories
rataGUI
Customizable and intuitive video acquisition system for real-time animal tracking and behavior quantification
Kilosort
Fast spike sorting with drift correction for up to a thousand channels
capex
CAPE using text-graphs
gpu-camera-sample
Image processing software on GPU (Windows, Linux, ARM) for real time machine vision camera applications. Performance benchmarks and Glass-to-Glass time measurements. MIPI CSI cameras support. RAW2RGB processing on CUDA with 16-bit ISP. Software for Jetson.
DLCconverterDLT
functions for for converting data from DeepLabCut formatting to DLTdv tools or Argus format
eyeloop
EyeLoop is a Python 3-based eye-tracker tailored specifically to dynamic, closed-loop experiments on consumer-grade hardware.
JARVIS-AcquisitionTool
AcquisitionTool to record multi-camera recordings for the JARVIS 3D Markerless Pose Estimation Toolbox
abcTau
a Python package for unbiased estimation of timescales and hypothesis testing
asm-workflow
Workflow for collecting human keypoint annotations using Amazon SageMaker
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals
RheMAP
Non-linear warps between common rhesus macaque brain templates
undivid
Undistort videos using OpenCV.
autopilot
Distributed behavioral experiments
gift
Group ICA/IVA software (MATLAB)
ASWC
Simulation and Data for the Average Sliding Window Correlation method. doi: 10.1002/hbm.24509
tMKL
Resting State Dynamics Meets Anatomical Structure: Temporal Multiple Kernel Learning (tMKL) Model
NMT
NIMH Macaque Template
ofxMachineVision
Interfaces and helpers for working with machine vision cameras
openFrameworks
openFrameworks is a community-developed cross platform toolkit for creative coding in C++.
NGNIv1-Platform
Released resources for NGNIv1 online real-time spike sorting platform
pycar
python code for RAICAR and BICAR
ofxSingleton
Singleton pattern for classes (doesn't need to be with openFrameworks, but we're laying it out like it is)
QtOpenCVViewerGl
Qt widget to display OpenCV images in an OpenGL frame
ofxSpinnaker
openframeworks addon for interfacing with FLIR (ne Point Grey) cameras
Planner
MR Guided Planning Software
ofxAddonLib
A props file to setup properties for addons as projects (Visual Studio)
Impalyzer
Impedance (spectrum) analyzer for microelectrodes based on AD5933