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Fulcrum Genomics

Boulder, CO

http://www.fulcrumgenomics.com

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fulcrumgenomics

ga4gh

samtools

StripesFramework

Tim Fennell's repositories

pipebuffer

A command line program for large scale buffering between piped programs

Language:RustMIT13 2 1

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellMIT020

calitas

This repository is home to CALITAS, a CRISPR-Cas-aware ALigner for In silico off-TArget Search. CALITAS implements a customized gapped alignment of guide sequences to genomes and other reference sequences, returning consistent and non-redundant alignments.

Language:ScalaBSD-3-Clause-Clear010

digenomitas

Digenome software

Language:ScalaBSD-3-Clause-Clear010

gatk

Official code repository for GATK versions 4 and up

Language:JavaBSD-3-Clause020

GKL

Accelerated kernel library for genomics

Language:CMIT000

kraken

Kraken taxonomic sequence classification system

Language:C++GPL-3.0020

Kraken_db_install_scripts

Updated Kraken DB install scripts to cope with new-ish NCBI structure

Language:Perl000

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Language:JavaMIT020

r-rcpp-feedstock

A conda-smithy repository for r-rcpp.

Language:ShellBSD-3-Clause000

scala-collection-compat

Scala 2.13 Collection Compatibility Library

Language:ScalaApache-2.0010

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Language:PythonBSD-3-Clause020

tabulate

Simple command line utility to generate fixed-width tables from tab-separated inputs

Language:ScalaMIT020

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

Language:HTMLMIT020

VarDict

VarDict

Language:PerlMIT020

VarDictJava

VarDict Java port

Language:Java020