tannerjared

Jared Tanner's starred repositories

OpenVoice

Instant voice cloning by MIT and MyShell.

Language:PythonMIT28625 211 236

nilearn

Machine learning for NeuroImaging in Python

Language:PythonNOASSERTION1168 70 2075

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Language:HTMLApache-2.0630 31 1821

ANTsPy

A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.

Language:PythonApache-2.0629 15 455

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

Language:PythonApache-2.0294 18 682

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

Language:C++MPL-2.0292 32 1421

bids-starter-kit

The Starter-kit has moved to the new BIDS website.

Language:MATLABCC-BY-4.0261 21 135

bids-validator

Validator for the Brain Imaging Data Structure

Language:JavaScriptMIT181 12 866

bids-examples

A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.

Language:MATLAB169 34 109

clinicadl

Framework for the reproducible processing of neuroimaging data with deep learning methods

Language:PythonMIT160 9 169

Dcm2Bids

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

Language:PythonGPL-3.0157 7 154

vistasoft

VISTASOFT is the main software repository of the VISTA lab at Stanford University.

Language:MATLAB147 50 202

qsiprep

Preprocessing of diffusion MRI

Language:PythonBSD-3-Clause138 15 492

smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

Language:PythonApache-2.0132 14 183

BrainStat

A statistics and context decoding toolbox for neuroimaging.

Language:Jupyter NotebookNOASSERTION93 8 78

niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)

Language:PythonApache-2.087 18 233

fsbrain

R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.

Language:RNOASSERTION64 3 52