sujunhao

RENET2

RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion

_rHAT

DNA read alignment tool

deBGA

de Bruijn Graph-based read aligner

sujunhao.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

.tmux

Oh My Tmux! My pretty + versatile tmux configuration that just works (imho the best tmux configuration)

algorithms-1

Minimal examples of data structures and algorithms in Python

alphafold

Open source code for AlphaFold.

BERT-Relation-Extraction

PyTorch implementation for "Matching the Blanks: Distributional Similarity for Relation Learning" paper

bioconda-recipes

Conda recipes for the bioconda channel.

CalliNGS-NF

GATK RNA-Seq Variant Calling in Nextflow

Clair

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

Complete-Striped-Smith-Waterman-Library

deBWT

implementation of a BWT constructor

deep-photo-styletransfer

Code and data for paper "Deep Photo Style Transfer": https://arxiv.org/abs/1703.07511

deeplearning-biology

A list of deep learning implementations in biology

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

DoubletFinder_204_fix

R package for detecting doublets in single-cell RNA sequencing data

GERMLINE

compute IBD, base on GERMLINE version1.4.1, fix bug and add features

K-BERT

Source code of K-BERT

leviosam2

Fast and accurate coordinate conversion between assemblies

loguru

Python logging made (stupidly) simple

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

Sequoia

Repository for the Sequoia phylogeny reconstruction pipeline

shadowsocks

SurVirus

sv-benchmark

Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files

vireo

Demultiplexing pooled scRNA-seq data with or without genotype reference

weapp-developer-guide

WeGene 微解读专业版开发者文档

wiki-website

Support site for Markdown Editor Typora