Subhi's repositories
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
MIT000
bioinformatics-workbook
Bioinformatics Workbook repository
Language:HTMLMIT000
cbioportal
cBioPortal for Cancer Genomics
Language:JavaScriptAGPL-3.0000
common_scripts
my bin directory
Language:Perl000
000
Language:R000
facetsY
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
Language:R000
labs
Rmd source files for the HarvardX series PH525x
Language:RMIT000
Language:R000
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
Language:RMIT000
MSKCC-Oncokb-Actionability-
Scripts to make Oncokb Actionability Figure
000
Language:HTML000
000
oncokb-annotator
Annotates variants in MAF with OncoKB annotation.
Language:PythonAGPL-3.0000
000
RNASeqAnalysis
Differential gene expression analysis, GSEA, ssGSEA
000
000
sc_tutorial
Tutorial for the analysis of scRNA-seq data based on Seurat v3.
MIT000
GPL-3.0000