Inline configuration parameters are not used with some commands

[Yohann]

Hello !

Describe the bug
Inline configuration parameters are not used when invoking some commands, such as batches or status
It seems to affect the batch_interval_mins parameter.

To Reproduce

Call:

oliver \
  --cromwell-server https://aks-sciworkflow.sophiagenetics.com/cromwell/ \
  --cromwell-api-version v1 \
  --batch-interval-mins 2 \
  batches

Output:

[E 220211 16:09:03 errors:28] The following required arguments are missing: batch_interval_mins!
We recommend you run 'oliver configure' to ensure all required arguments are cached in the oliver configuration file.
If you choose not to do this, you will need to pass their respective flags on the command line.

Expected behavior
Show job batches

Thanks for your help !

[Clay McLeod]

Hi @Melkaz, seems this issue has been resolved by the above PR. As such, I'm going to close the issue. Let us know if you have any problems with the latest version!