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stjude-biohackathon / KIDS23-Team3

SCCRIP (Sickle Cell Clinical Research and Intervention Program) established a longitudinal cohort at multiple sites with Sickle Cell Disease (SCD) in 2014 managed by St. Jude Clinical Hematology. A new collaborator for SCCRIP has longitudinal data for 600 SCD patients in OMOP CDM format and this effort is to convert OMOP CDM to SCCRIP format.

Home Page:https://www.stjude.org/patient-referrals/seek-treatment/taking-part-in-clinical-research/sickle-cell-clinical-research-intervention-program-sccrip.html

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Infrastructure set up - PostgreSQL, OHDSI Tools on Azure VM

RaghaSrinivasan opened this issue · comments

commented

Install PostgreSQL, JDK, Tomcat, WebAPI, OHDSI Tools -

OHDSI offers a wide range of open-source tools to support various data-analytics use cases on observational patient-level data. What these tools have in common is that they can all interact with one or more databases using the Common Data Model (CDM). For More info check out https://ohdsi.org/software-tools/

https://github.com/OHDSI/Tutorial-ETL

Any issues - please review for prior solutions at http://forums.ohdsi.org/[↩︎](https://ohdsi.github.io/TheBookOfOhdsi/ExtractTransformLoad.html#fnref37) and https://forums.ohdsi.org/c/implementers[↩︎](https://ohdsi.github.io/TheBookOfOhdsi/ExtractTransformLoad.html#fnref38)

commented

Following install instructions from : https://github.com/OHDSI/Broadsea

commented

Finished Postgres and Atlas setup