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stefanpeidli / mousipy

Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.

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FileNotFoundError: human_to_mouse.csv

georginaalbadri opened this issue · comments

commented

Hi, I used pip install mousipy to install and have tried to use translate on an anndata object that has mouse gene symbols. I'm getting a FileNotFoundError:

FileNotFoundError: [Errno 2] No such file or directory: '/Users/...python3.11/site-packages/mousipy/./hcop/human_to_mouse.csv'

commented

Hi, the recent version seemed to contain a bug. I will try to fix it soon. For now you can use an old version instead using:
pip install -U mousipy==0.1.3

commented

Fixed with v0.1.5. Simply upgrade using pip install -U mousipy