Stamatoyannopoulos Lab

Stamatoyannopoulos Lab's repositories

footprinting2012

DNaseI Footprinting

Language:C++GPL-2.04 90

hotspot

Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.

Language:ShellGPL-2.02 90

bcl_barcode_count

tally barcodes from Illumina sequencing machines

Language:Go1 90

An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.

Language:C++1 80

bedops

BEDOPS: high-performance genomic feature operations

Language:CNOASSERTION070

fastqc_parser

A parser for turning FastQC results into an object useful for analysis with Python

Language:Python080

hotspot2_deprecated

A faster implementation of hotspot

Language:Shell090

network-motifs

Language:C++GPL-2.0070

picard-parser

A parser for Picard output

Language:Python0100

r-utilities

A set of utilities for R

Language:Perl070

stampipes

This is a focused collection of makefiles and scripts for analysis on Illumina sample data.

Language:Python010 4

stampipes_test_data

Holds test data for stampipes

070