stain

scrapbook

Various small utillities

arcp-py

Create/parse arcp (Archive and Package) URIs

R-Pulsar-ARCHIVED

sunzip

Streaming unzip utility.

BCO_Specification

BioCompute is a community driven project to build a framework to standardize bioinformatics computations and analyses communication. This can be achieved by using the BioCompute Object (BCO). BCO aims to facilitate bioinformatic workflow related exchange and communication between regulatory agencies, pharmaceutical companies, bioinformatics platform providers and researchers. To read more about this framework please see the BCO specification document and publications located on our OSF page

bdbag-water-tale

Example Tale in BDBag format

benten

A language server for Common Workflow Language

bio-cwl-tools

bower

A curses terminal client for the Notmuch email system

clojure-site

clojure.org site

commonmark-spec

CommonMark spec, with reference implementations in C and JavaScript

curl

A command line tool and library for transferring data with URL syntax, supporting HTTP, HTTPS, FTP, FTPS, GOPHER, TFTP, SCP, SFTP, SMB, TELNET, DICT, LDAP, LDAPS, FILE, IMAP, SMTP, POP3, RTSP and RTMP. libcurl offers a myriad of powerful features

curl-docker

use curl from containers

cwl-from-galaxy

Standalone version tool to get cwl descriptions (initially an abstract cwl interface) of galaxy workflows and Galaxy workflows executions.

cwlprov-paper-gigascience

CWLProv paper submitted for GigaScience

datacrate

Bagit-based data packaging specification for dissemination of research data with useful human and machine readable metadata: "Make Data Crate Again!"

eolang-clj

Experimental Clojure mapping of eolang.org

extract-dockerfile

An example to extract metadata from a Dockerfile using schema.org

GSoC

OBF Google Summer of Code

html-tutorial

Reviving a HTML tutorial from 2000

jekyll-theme-rtd

Port of the Read the Docs theme to Jekyll to use with GitHub Pages.

lein-try

A Leiningen plugin for trying out new libraries

libhwloc-feedstock

A conda-smithy repository for libhwloc.

metaRbolomics-book

The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.

perl-oai-lib

HTTP::OAI

reveal-md

reveal.js on steroids! Get beautiful reveal.js presentations from any Markdown file

topmed-workflows

a place for topmed workflows

VMG3925-B10B

Firmware for the Zyxel VMG3925-B10B

Wf4Ever-PROV

The repository for the Wf4Ever team.

workflow-is-cwl

This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts