ssadedin / bpipe

Bpipe - a tool for running and managing bioinformatics pipelines

Home Page:http://docs.bpipe.org/

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.bpipedb location breaks bpipe on some clusters

gdevenyi opened this issue · comments

It is common for clusters to mount $HOME readonly on compute nodes to prevent usage of $HOME for storing data for processing.

Unfortunately, bpipe tries to store its job database there and dies immediately.

I would like to request an environment variable to control its location.

Closed in favour of #242