splicebox / MntJULiP

Comprehensive and scalable differential splicing analyses

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ValueError: Metadata inference failed in `ge`.

zhengjuanyu opened this issue · comments

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Hi, thank you so much for the great tool. I'm trying MntJULiP using GENCODE gene model and getting the error as below.
mnt-JULiP: 04-Mar-24 21:10:55: Creating output folder ...
mnt-JULiP: 04-Mar-24 21:10:55: Generating splice files (or reusing splice files if save-tmp set to true and splice files exist) ...
/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/sklearn/utils/extmath.py:985: RuntimeWarning: invalid value encountered in true_divide
updated_mean = (last_sum + new_sum) / updated_sample_count
/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/sklearn/utils/extmath.py:990: RuntimeWarning: invalid value encountered in true_divide
T = new_sum / new_sample_count
/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/sklearn/utils/extmath.py:1020: RuntimeWarning: invalid value encountered in true_divide
new_unnormalized_variance -= correction ** 2 / new_sample_count
/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/sklearn/utils/extmath.py:985: RuntimeWarning: invalid value encountered in true_divide
updated_mean = (last_sum + new_sum) / updated_sample_count
/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/sklearn/utils/extmath.py:990: RuntimeWarning: invalid value encountered in true_divide
T = new_sum / new_sample_count
/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/sklearn/utils/extmath.py:1020: RuntimeWarning: invalid value encountered in true_divide
new_unnormalized_variance -= correction ** 2 / new_sample_count
mnt-JULiP: 04-Mar-24 21:10:55: Processing 2 samples ...
Traceback (most recent call last):
File "/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/dask/dataframe/utils.py", line 177, in raise_on_meta_error
yield
File "/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/dask/dataframe/core.py", line 5671, in elemwise
meta = partial_by_order(*parts, function=op, other=other)
File "/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/dask/utils.py", line 1225, in partial_by_order
return function(*args2, **kwargs)
File "/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/pandas/core/ops/common.py", line 65, in new_method
return method(self, other)
File "/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/pandas/core/ops/init.py", line 370, in wrapper
res_values = comparison_op(lvalues, rvalues, op)
File "/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/pandas/core/ops/array_ops.py", line 244, in comparison_op
res_values = comp_method_OBJECT_ARRAY(op, lvalues, rvalues)
File "/home/jg/miniconda3/envs/zjy/lib/python3.7/site-packages/pandas/core/ops/array_ops.py", line 56, in comp_method_OBJECT_ARRAY
result = libops.scalar_compare(x.ravel(), y, op)
File "pandas/_libs/ops.pyx", line 103, in pandas._libs.ops.scalar_compare
TypeError: '>=' not supported between instances of 'str' and 'int'

Thank you so much for your help.