PackagesNotFound
charlesopara opened this issue · comments
Hi,
I tried installing the after cloning the repo. However, the I run "conda env create -f mntjulip_cov.yml"; I get the following error:
ResolvePackageNotFound:
- mkl==2021.4.0=h06a4308_640
- fontconfig==2.13.1=h6c09931_0
- tk==8.6.12=h1ccaba5_0
- ninja==1.10.2=h06a4308_5
- librsvg==2.54.4=h19fe530_0
- xz==5.2.6=h166bdaf_0
- fribidi==1.0.10=h7b6447c_0
- libtool==2.4.6=h295c915_1008
- ld_impl_linux-64==2.38=h1181459_1
- glib==2.69.1=h4ff587b_1
- zstd==1.5.2=ha4553b6_0
- python==3.7.13=h12debd9_0
- cairo==1.16.0=h19f5f5c_2
- gdk-pixbuf==2.42.8=h433bba3_0
- ca-certificates==2022.12.7=ha878542_0
- libxml2==2.9.14=h74e7548_0
- pip==22.1.2=py37h06a4308_0
- libdeflate==1.13=h166bdaf_0
- sqlite==3.39.2=h5082296_0
- libev==4.33=h516909a_1
- graphite2==1.3.14=h295c915_1
- _openmp_mutex==4.5=2_gnu
- graphviz==2.50.0=h3cd0ef9_0
- freetype==2.11.0=h70c0345_0
- pcre==8.45=h295c915_0
- atk-1.0==2.36.0=ha1a6a79_0
- ncurses==6.3=h5eee18b_3
- pango==1.50.7=h05da053_0
- bzip2==1.0.8=h7f98852_4
- lz4-c==1.9.3=h295c915_1
- ninja-base==1.10.2=hd09550d_5
- liblapack==3.9.0=12_linux64_mkl
- libcblas==3.9.0=12_linux64_mkl
- intel-openmp==2021.4.0=h06a4308_3561
- readline==8.1.2=h7f8727e_1
- mkl_random==1.2.2=py37h51133e4_0
- scikit-learn==1.0.2=py37hf9e9bfc_0
- mkl-service==2.4.0=py37h7f8727e_0
- expat==2.4.9=h6a678d5_0
- libgcc-ng==12.2.0=h65d4601_19
- openssl==1.1.1t=h0b41bf4_0
- libgd==2.3.3=h695aa2c_1
- libstdcxx-ng==11.2.0=h1234567_1
- numpy==1.21.5=py37h6c91a56_3
- _libgcc_mutex==0.1=conda_forge
- harfbuzz==4.3.0=hd55b92a_0
- icu==58.2=he6710b0_3
- krb5==1.19.4=h568e23c_0
- libssh2==1.10.0=haa6b8db_3
- libedit==3.1.20221030=h5eee18b_0
- libgfortran5==12.2.0=h337968e_19
- c-ares==1.18.1=h7f98852_0
- pysam==0.21.0=py37hee149a5_0
- jpeg==9e=h7f8727e_0
- libxslt==1.1.35=h4e12654_0
- zlib==1.2.13=h166bdaf_4
- gts==0.7.6=hb67d8dd_3
- scipy==1.7.3=py37hf2a6cf1_0
- mkl_fft==1.3.1=py37hd3c417c_0
- libffi==3.3=he6710b0_2
- gtk2==2.24.33=h73c1081_2
- lerc==3.0=h295c915_0
- libgcc==7.2.0=h69d50b8_2
- libzlib==1.2.13=h166bdaf_4
- pixman==0.40.0=h7f8727e_1
- tidyp==1.04=hec16e2b_4
- libuuid==1.0.3=h7f8727e_2
- libwebp-base==1.2.4=h5eee18b_0
- libcurl==7.88.1=h91b91d3_0
- libpng==1.6.37=hbc83047_0
- libblas==3.9.0=12_linux64_mkl
- libtiff==4.2.0=hf544144_3
- numpy-base==1.21.5=py37ha15fc14_3
- libgfortran-ng==12.2.0=h69a702a_19
- libnghttp2==1.47.0=h727a467_0
- gobject-introspection==1.72.0=py37hbb6d50b_0
- libxcb==1.15=h7f8727e_0
- libgomp==12.2.0=h65d4601_19
Hi charlesopara,
Thanks for using MntJULiP! I have tested to create the env in linux. Can I know the platform of your conda?
Hi Ed,
I'm currently using conda version 23.9.0 on MacOS x64 (M2)
Thanks for your reply! We are testing on the MacOS, in the meantime, it is encouraged to use the Linux platform for the best experience. Please kindly let us know if you have any feedback.
I switched to a Linux platform and now I get 2 new errors.
The module load came still doesn't work even after I had cmake installed: error: [Errno 2] No such file or directory: 'cmake': 'cmake'
And even when I tried proceeding with run.py, it returns a new error: FileNotFoundError: [Errno 2] No such file or directory: '/.../MntJULiP/bin/junc':
Upon installation, a bin subfolder was created, however it is empty.
I have no idea what to look for.
Sorry for the delay, we were working on the code. We have changed the installation instruction to replace cmake, please give it a try if you get the chance and let us know how it works!
Thanks Ed.