SparkDS's repositories
demultiplex
Demultiplexing pipeline for sequencing data
Language:NextflowMIT000
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language:NextflowMIT000
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
Language:NextflowMIT000
differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
MIT000