SoyBase's repositories
jekyll-soybase
SoyBase site, forked from jekyll-legumeinfo mid-2022; built with Jekyll and served on GitHub Pages
bioconda-recipes
Conda recipes for the bioconda channel.
shiny.soybase.org
Papers for USDA soybean project
parentage
Code for deriving pedigree/parentage history, given data about individuals and parents.
GBrowse
the Generic Genome Browser
map-markers-to-assembly
Given a file of marker locations in one genome, report the locations of those markers in a second genome.
gcv
Federating genomes with love (and functional annotations => synteny)
breedbase_dockerfile
The Dockerfiles for breeDBase
scinet-site
A prototype of the USDA-ARS Website
cmap
A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species.
amigo
AmiGO is the public interface for the Gene Ontology.
web-components
A collection of Web Components for interacting with and visualizing biological data.
graphql-server
A GraphQL server that supports dynamic content in the LIS Jekyll site
gcvit
CViT based tool for visualising VCF files.
jekyll-soybase-FM
New jekyll-soybase that draws on the latest stuff in jekyll-legumeinfo.
DroneImageScripts
OpenCV scripts
CuratorTools
A set of curator tools designed to manage genomic datasets.
pathway_tools_docker
Docker files and instructions for setting up a web install of Pathway tools
SoySNP-Names
Script used to create internal SoyBase "ssID" names for SNP experiments
crossmap-workflow
Workflow and script for converting genomic coordinates using MUMmer output and CrossMap
node-time
"time.h" bindings for Node.js