Snowseed's repositories
maize_v4_TE_annotation
scripts and intermediate files used to annotate TEs in Jiao et al.
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
aradeepopsis
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
awesome-python-cn
Python资源大全中文版，包括：Web框架、网络爬虫、模板引擎、数据库、数据可视化、图片处理等，由「开源前哨」和「Python开发者」微信公号团队维护更新。
bio_tools
Useful bioinformatic scripts
biocode
Bioinformatics code libraries and scripts
cleaner_wrasse_genome
Labroides dimidiatus (Bluestreak cleaner wrasse)
GenomeSyn
We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a necessary complement to the study of genomic synteny and structural variation and its visualization tools.
HiC-data-analysis
General analysis of HiC data, including compartment A/B, domains and loops.
ITIPs
Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data
LINKVIEW
DNA序列比对结果 可视化展示工具
pbbioconda
PacBio Secondary Analysis Tools on Bioconda
PhyLTR
Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
smartie-sv
calling SVs from Blasr contig level alignments
SubPhaser
Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.
TDGP
my 3D genome pipeline and scripts repository
vg
tools for working with genome variation graphs