snakemake-workflows / dna-seq-neoantigen-prediction

Snakemake workflow for neoantigen prediction

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prediction tools for neoantigens from tumor-specific alternative splicing

dlaehnemann opened this issue · comments

Tools to predict alternative splicing from whole exome sequencing variant calls:

  • Spliceman
  • MutPredSplice

Other tools for alternative splicing prediction (from RNAseq?):

  • JuncBase
  • SpliceGrapher
  • rMATS
  • SplAdder
  • ASGAL
  • MiSplice

TODO: further annotate this list with repos, licenses and last commits