Which singularity image is used?
ManavalanG opened this issue · comments
What singularity image is used for this pipeline? Repo's readme says this pipeline can be run with singularity, but I don't see singularity: defined anywhere in the pipeline.
Running a Snakefile without singularity: defined doesn't result in any warning or error. Isn't this a bug?
Snakefile:
rule aa:
output: 'aa.txt'
shell: "touch {output}"
Command used and its output:
$ snakemake --use-singularity
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 1
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 aa
1
[Wed Dec 11 13:28:33 2019]
rule aa:
output: aa.txt
jobid: 0
[Wed Dec 11 13:28:33 2019]
Finished job 0.
1 of 1 steps (100%) done