smsaladi

phpmyadmin_heroku

Running phpMyAdmin on Heroku

pymol_viridis

Colorblind-friendly, perceptually uniform palettes for pymol

jetfighter

Fix rainbow colormaps before it's too late!

codonw-slim

A slimmed down fork of CodonW with python bindings

chimerax_viridis

Colorblind-friendly, perceptually uniform palettes for chimerax

codon-harmonizer

A different take on codon optimization

codonpair

A codon pair score/codon pair bias calculator

structure_scales

structures need scales!

vmd_viridis

Colorblind-friendly, perceptually uniform palettes for vmd

digest-preprints

Reserves (biorixv) preprints in an easy-to-work-with format

ProDA

A Protein Domain aligner, e.g. MSAs with repeats and rearrangements (A fork)

pybioutils

Just some utilities for parsing/working with various biological data files

ArchiveDiscourse

Code for archiving a Discourse site into static HTML

bebi103

Utilities for BE/Bi 103

EASTdb

eca-bioinf-handbook

Lecture notes/book in progress on computing for conservation genomics

gitignore

A collection of useful .gitignore templates

iiif-biorxiv

Config for an iiif server serving pages of biorxiv papers

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

moltemplate

A general cross-platform tool for preparing simulations of molecules and complex molecular assemblies

multi-barcode-scanner-js_demo

pander

An R Pandoc Writer: Convert arbitrary R objects into markdown

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

promals

This is a fork of PROMALS3D

ranklib-correlation

Implementing correlation metrics for Ranklib

relion

Image-processing software for cryo-electron microscopy

resmap

Compute the local resolution of 3D density maps

RespiCov-analyze

Jupyter notebook analyzing nanopore sequencing data according to the RespiCov paper

sgidspace

trust-ecrs

Find trusted ECRs for peer review