Samantha's repositories
CCBR-GitHub-Playground
This training repo is for CCBR internal devs to familiarize with GitHub operation
Coursera_2016_DST
Coursera Data Scientist Toolbox Course
Coursera_RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
datasharing
The Leek group guide to data sharing
Donut_Falls
Basic workflow for nanopore sequencing data
github-readme-stats
:zap: Dynamically generated stats for your github readmes
gmu
class projects
Grandeur-test
UPHL's Reference Free Pipeline
microbiome_workflow
Tools for the analysis of 16s sequencing of the Microbiome
MISO
MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
mycosnp-nf
CDCgov/mycosnp-nf
nimh_repro_wrkshpAug2017
Repository for the NIMH Workshop on Open and Reproducible Neuroscience on Aug 1 & 2, 2017
phoenix
🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
Pipeliner
Documentation
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
SAMS_SARS
Ohio COVID project
scicomp_240501_mkdocs
tutorial for scicomp on mkdocs/github actions
scicomp_howtos
Trainings for SciComp Team
sciCompBestPractices
Best practices of Bioinformatics & Programming developed by CDC's OAMD SciComp
wf-basecalling
Lifted from wf-basecalling pipeline
wf-paired-end-illumina-assembly
pathogen agnostic general workflow for genome assembly of Illumina paired-end sequence data