mvtoms.py: AttributeError: module 'numpy' has no attribute 'bool'.
mpatir opened this issue · comments
Hi developers.
I am trying to retrieve the 32k data from the SARAO archive to IDIA.
I installed katdal on IDIA as follows:
srun --X11 --cpus-per-task=2 --mem=16GB --pty bash virtualenv -p python3 /scratch3/users/mpati/virtualenvk/katdal source /scratch3/users/blah/virtualenvk/katdal/bin/activate pip install katdal pip install python-casacore deactivate
I am running katdal as below:
source /scratch3/users/blah/virtualenvk/katdal/bin/activate export KATSDPTELSTATE_ALLOW_PICKLE=1 mvtoms.py <token-link> -v -C 19829,21551 -p HH,VV --flags '' -o outputfile.ms
I get the error below: The pip installed katdal seems to be incompatible with something. In any case, how can we fix this issue?
/scratch3/users/blah/virtualenvk/katdal/lib/python3.8/site-packages/katdal/ms_extra.py:97: FutureWarning: In the futurenp.boolwill be defined as the corresponding NumPy scalar. 'BOOLEAN': np.bool, Traceback (most recent call last): File "/scratch3/users/blah/virtualenvk/katdal/bin/mvftoms.py", line 39, in <module> from katdal import averager, ms_async, ms_extra File "/scratch3/users/blah/virtualenvk/katdal/lib/python3.8/site-packages/katdal/ms_async.py", line 36, in <module> from . import ms_extra File "/scratch3/users/blah/virtualenvk/katdal/lib/python3.8/site-packages/katdal/ms_extra.py", line 97, in <module> 'BOOLEAN': np.bool, File "/scratch3/users/blah/virtualenvk/katdal/lib/python3.8/site-packages/numpy/__init__.py", line 305, in __getattr__ raise AttributeError(__former_attrs__[attr]) AttributeError: module 'numpy' has no attribute 'bool'.np.boolwas a deprecated alias for the builtinbool. To avoid this error in existing code, use boolby itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, usenp.bool_here. The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
Hi Mpati, thanks for reporting this! This is a bug in katdal that has been fixed on the master branch, but has not been released yet. I'll get going with making a new release.
In the meantime you could avoid this by using the master branch or downgrading to numpy 1.23.
Hi Ludwig,
Thank you so much for having a look at this issue.
Okay, I have just installed master for now (pip install git+) while we wait for the new release.
It works great now.
Cheers
The fix has been released in version 0.21.