Missing line break in FASTA output
snayfach opened this issue · comments
The program is not properly writing the final output using the command:
pprodigal.py -C 100 -T 64 -m -p meta -i genomes.fa -a proteins.faa &> /dev/null
Look at this record and notice that the protein sequence has overwritten part of the sequence header line:
>OK040792_1 # 1 # 882 # 1 # ID=3136_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.715MTAADPLDMSDLPRHTVRRVMTAEEATELVGTTVPRLDPTDALNRGGLWLDEETGEPVLG
Thanks for catching this @snayfach!
Issue should be resolved now.