sjaenick / pprodigal

Python3 wrapper for parallelized gene prediction using Prodigal

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Missing line break in FASTA output

snayfach opened this issue · comments

The program is not properly writing the final output using the command:
pprodigal.py -C 100 -T 64 -m -p meta -i genomes.fa -a proteins.faa &> /dev/null

Look at this record and notice that the protein sequence has overwritten part of the sequence header line:

>OK040792_1 # 1 # 882 # 1 # ID=3136_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.715MTAADPLDMSDLPRHTVRRVMTAEEATELVGTTVPRLDPTDALNRGGLWLDEETGEPVLG

Thanks for catching this @snayfach!

Issue should be resolved now.