duplicated genes after run pprodigal
jianshu93 opened this issue · comments
For a contig file, I have an unique contig id let's say >k127_95386, after running you pprodigal, there are 3 copies of >k127_95386_1 gene in the fna output, which I think is strange. When you cut the input fasta contig file into chunks, do they have overlaps? This could be a potential bug and we may have duplicated genes if there are overlap of the chunks.
Strange, this should not happen. Can you provide steps to reproduce as well as relevant input files?