sivico26

Simón Villanueva Corrales's starred repositories

AppFlowy

Bring projects, wikis, and teams together with AI. AppFlowy is an AI collaborative workspace where you achieve more without losing control of your data. The best open source alternative to Notion.

Language:DartAGPL-3.05076300

Polypolish

a short-read polishing tool for long-read assemblies

Language:RustGPL-3.013800

tiebrush

Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)

Language:C++MIT1600

Rudra

Rust Memory Safety & Undefined Behavior Detection

Language:RustApache-2.0130800

brms

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

Language:RGPL-2.0125900

Finder

A fully automated gene annotator from RNA-Seq expression data

Language:PythonMIT5100

cuteSV

Long read based human genomic structural variation detection with cuteSV

Language:PythonMIT23800

octopus

Bayesian haplotype-based mutation calling

Language:C++MIT30000

LINKS

⛓ Long Interval Nucleotide K-mer Scaffolder

Language:PerlGPL-3.07000

coding-interview-university

A complete computer science study plan to become a software engineer.

CC-BY-SA-4.029964500

hypo

HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies

Language:C++GPL-3.05600

ultra

Long-read splice alignment with high accuracy

Language:Python6000

datasharing

The Leek group guide to data sharing

650700

mater

🍅 A simple menubar Pomodoro app

Language:JavaScriptMIT54700

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

Language:PythonNOASSERTION38400

FASTK

A fast K-mer counter for high-fidelity shotgun datasets

Language:CNOASSERTION11000

genomepy

genes and genomes at your fingertips

Language:PythonMIT37100

rpackages

R package development - the Leek group way!

51300

argbash

Bash argument parsing code generator

Language:M4NOASSERTION138000

present

A terminal-based presentation tool with colors and effects.

Language:PythonApache-2.0432200

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellMIT160000

edyeet

base-accurate DNA sequence alignments using edlib and mashmap2

Language:C++MIT3300

editly

Slick, declarative command line video editing & API

Language:JavaScriptMIT466400

outrun

Execute a local command using the processing power of another Linux machine.

Language:PythonApache-2.0311700

MarkdownEditText

A native Rich Text Editor with Markdown export option.

Language:KotlinApache-2.012100

Markwon

Android markdown library (no WebView)

Language:JavaApache-2.0269300

rich

Rich is a Python library for rich text and beautiful formatting in the terminal.

Language:PythonMIT4836500

gather

Spit shine for Jupyter notebooks 🧽✨

Language:Jupyter NotebookMIT53000

culebrONT

A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.

Language:PythonGPL-3.03600

RagTag

Tools for fast and flexible genome assembly scaffolding and improvement

Language:PythonMIT44800