simroux

simroux's repositories

Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)

Language:PerlGPL-2.0104 7 89

Archive for ClusterGenomes scripts

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Set of scripts and data used to detect putative inovirus sequences and/or taxonomically classify them.

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Data and information related to work by the ICTV Virophage Study Group

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customizable pipeline to identify viral sequences from (meta)genomic data

Language:PythonGPL-2.03 20

An analysis and visualization platform for 'omics data

Language:PythonGPL-3.0010

The anvi'o community web page

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Conda recipes for the bioconda channel.

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Scripts used in the analysis of metabolomics data from the Cyanophage - Cyanobacteria - Grazer experiment

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Comparisons of multiple different prophage predictions

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Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.

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Draft script to generate Anvi'o-compatible annotation files from VirSorter2 output, for visualization of VS2 results in Anvi'o

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Custom perl scripts used in "Optimizing de novo genome assembly from PCR-amplified metagenomes"

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Set of scripts used in the initial study of VirSorter Curated Dataset

Language:PerlGPL-2.0030